Detailed information on CNT30684440


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187466Triticum urartuSecale cereale57.363.2596.25506forward
CNT30393452Triticum urartuTriticum turgidum85.1692.7399.6752forward
CNT30664734Triticum urartuTriticum dicoccoides81.8868.699.72723forward
CNT30142775Triticum urartuLolium perenne56.6343.4490.6500forward

Expression of CNT30684440

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

>peptide 2 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 3 (79 aa)
MMSRPSPRGPPPTRPPSEKIWAPALNHTASPNLMPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 4 (32 aa)
ELEVPYTPCQLMILSNDTRFFHPFPRAHLVLN*

Sequence

>CNT30684440
TGAGCTTGAAGTACCATATACGCCATGCCAGTTGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAA
TTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTA
CAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACATGGC
GAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTAGATGATG
TCGAGGCCCTCGCCGAGGGGCCCGCCACCAACACGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGT
TCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGG
GTCAGCAGACAATCCGGCGGTGTCCCATCCGTAGTCGCCGGGGAACTCGCCGGTCATCGCGCCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAG
CGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCAGTGAGATGAACTGGTGGATGGTGTGTGTTTGGGTGG