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Detailed information on CNT30579499


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 8e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393452Echinochloa crusgalliTriticum turgidum39.132.0693.08260forward
CNT30142775Echinochloa crusgalliLolium perenne38.0521.9889.33253forward

Expression of CNT30579499

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPFPVTMACTKKPNMENMARRPFLSSLTLSSAAVSGSSARPSGSKAPPG*

>peptide 2 (43 aa)
MARARSPERSLTCRGRSWWRRPMRCWRPGPRRGRRGSRWAPSR*

>peptide 3 (33 aa)
MYRQRQLLMWSLVSTEHTPARAKLLHAYCNKAE*

>peptide 4 (39 aa)
SGNPSRYLRKKQCRLIKRCFTHECYTYTIDSSADISIRA*

Sequence

>CNT30579499
TCCGGAAATCCGTCACGCTACTTAAGAAAGAAACAATGTCGATTGATCAAACGATGTTTCACTCACGAATGTTACACGTACACCATTGATTCATCAGCTG
ACATAAGCATCCGTGCCTAGTTTACAATCTCACACCACATGTACAGGCAGAGGCAGCTGCTGATGTGGTCACTGGTCAGCACAGAGCATACGCCGGCGCG
TGCAAAACTACTACACGCCTACTGCAACAAAGCAGAGTAGAGTACACAGGGCCACAGGGGCATGGCTCGAGCTCGATCGCCGGAGCGCTCGCTCACTTGC
CGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGGCGACCGGGTCCGCGACGTGGTCGAAGAGGTTCTCGATGGGCCCCTTCCCGGTGACGATGGC
CTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGGCGGTGTCCGGGTCGTCGGCGAGGCCC
AGCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGGCCCTCGCCGAGCGGCCCGCCGCCGACGCGGAAGCTGGTGGTCTGGTGGAGCGCTGACGCGG
CCATCTTCTCGATCTCCGGCGGTGAGCTGAGCACGACGTGTAGTGGGATTGGTGAGCGATCGATC