CANTATAdb - search

Detailed information on CNT30187466

BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 7e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30393452	Secale cereale	Triticum turgidum	96.75	95.44	95.99	774	forward
CNT30665487	Secale cereale	Triticum dicoccoides	94.5	79	96.16	756	forward
CNT30142775	Secale cereale	Lolium perenne	85.5	59.43	88.3	684	forward
CNT30684440	Secale cereale	Triticum urartu	89.25	80.86	95.38	714	forward
CNT30100870	Secale cereale	Oryza rufipogon	28.38	41.96	92.95	227	forward

Expression of CNT30187466

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

>peptide 2 (43 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

>peptide 3 (79 aa)
MMSRPSPRGPPPTRPPSEKIWAPALNHTASPNLMPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADSPAVSHP*

Sequence

>CNT30187466
GCCAGTTGATGATCTTGAGTAATGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGTGCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCA
GCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCT
CGTCCGATGGACGGACGGACGGATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACTGGGTC
GGCGACGTGGTCGAAGAGGTTCTCAACGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTG
AGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGCGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCACCGA
GGGGGCCGCCGCCAACGCGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACTGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTC
CGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCGGCCGACAGCCCC
GCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGTACC