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Detailed information on CNT30391596


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET008652, E-value = 8e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696542Triticum turgidumOryza sativa20.969.8181.65109forward
CNT30179559Triticum turgidumSecale cereale29.4229.0993.46153forward
CNT30442508Triticum turgidumAegilops tauschii33.2716.9994.8173forward
CNT30660752Triticum turgidumTriticum dicoccoides36.157.3493.09188reverse complement
CNT30108677Triticum turgidumOryza longistaminata24.045.184.8125reverse complement
CNT30102453Triticum turgidumOryza rufipogon23.6525.6286.99123reverse complement

Expression of CNT30391596

Peptides detected in this lncRNA

>peptide 1 (83 aa)
RPADLEVSPTFNIANLKPYLGEEDELLSRMASIQEGEDDEDIPTTITCTAPTVTYTRPITRARACQLNYQKGLAWTRTINIGA*

>peptide 2 (43 aa)
MSFCRGWLQFKKGRMMRTSQPQLHAQPLLLHILDQLLELVHAN*

Sequence

>CNT30391596
GCGTCCTGCAGATTTGGAGGTTAGTCCCACTTTTAACATTGCAAATTTGAAGCCTTATTTGGGTGAGGAAGATGAGCTTCTGTCGAGGATGGCTTCAATT
CAAGAAGGGGAGGATGATGAGGACATCCCAACCACAATTACATGCACAGCCCCTACTGTTACATATACTAGACCAATTACTAGAGCTCGTGCATGCCAAT
TAAATTACCAGAAGGGCCTAGCATGGACAAGAACGATTAACATTGGAGCATGATCAACCATGGAGAGGATGGCGTGCTCAAGGGGAACGACAATGGAGTT
TCTGTTTTGGAGTTTTGAACACTTTGGAGCCAGCTGAAGGAAATATGCCCTAGAGGCAATAATTAAGATGTTATTTATATTTCCTTATATCATGATAAAT
GTTTATTATTCATGCTAGAATTGTATTAACCAGAAACTAGTACATGTGTGAATACATAGACAAACAAAGTGTCCCTAGTATGCCTCTACTTGACTAGCTT
GTTAACTAAAGATGGTTAAG