« Back to Oryza longistaminata search


Detailed information on CNT30108677


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004282, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695689Oryza longistaminataOryza sativa34.8780.9798.95855forward
CNT30673303Oryza longistaminataSetaria viridis7.5455.5688.65185reverse complement
CNT30523910Oryza longistaminataSetaria italica7.1453.8584175forward
CNT30391596Oryza longistaminataTriticum turgidum5.124.0484.8125reverse complement
CNT30596384Oryza longistaminataOryza meridionalis27.8569.4898.83683reverse complement
CNT30102152Oryza longistaminataOryza rufipogon32.3899.3797.98794reverse complement
CNT30117997Oryza longistaminataOryza nivara34.9155.6699.07856reverse complement
CNT30557434Oryza longistaminataPanicum hallii4.2832.4183.81105reverse complement

Expression of CNT30108677

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVKVIKVLPNLVQNINNYGTEGSIYVISFIISLYLILKIVSKHPM*

>peptide 2 (30 aa)
MVRPHIAESRRRDLSNKYSFAPFALRSEEH*

Sequence

>CNT30108677
CCGCCAGCCGCCTGCACCCATCTGCGCGCTGCCGGCCAGCCGCCCCATATCCCTTGCAGAAAAGAGTAGAGAAGAGTAGAGACTAGAGAAGAGCGGAGAA
AAGATAATAGGTAAATTTATGGACAGCTATGTTGATTTGTTGGGTTAGCTGGAAGATGTTATTAAAATATAGATGGGTGTGATATATATGATGTAATATG
GATGATCTTTTGGAGTGGGAAGGGATATGAATGAGAAATCTTTTTTGGATGACTATCCATATAAACATGTGGAGGATCAAATATGGATGAGCTCCTGGGA
ATGCTCTTAGAGTAGGTTTAATAGGAGTGCTGGCTGTTAGCTGCATTAGGGGTAGTTTGGATACAGGAACTAAACATGCTACATCCGATATTGGAACACT
AATTTGGAGTATTAAACATAGACTAATTACTCAGATGGAGGCTAATTTGTGAGACGAATCTATTAAGCCTAATTAATCCTTGATTATCACAAATTTACTG
TAGCACTATATTGTCAAATCATGGACTAATTAGTATTAGTAGATTTGTCTTGCCAATTAGCCTCTACTCCCCCGGTTTCATTGTAATTGACGTTTTGGAC
AATGACACGTTTTACAAAATATATCTTTGACATTATTTTTCTATTATAATATATATAATAAATAAATGTATATTTACTTTTATTATTGTGCTTTGAAAGA
CACATCTATATATGTTGCTCTGGTTCCTTTCAACTAAATATTTTTAAAGTTATTGATGGTTAAAGTTATAAAAGTTTTACCTAACCTTGTCCAAAACATC
AATAATTATGGAACCGAAGGGAGTATCTATGTAATTAGTTTTATAATTAGCCTATATTTAATACTCAAAATAGTGTCCAAACATCCGATGTGACATGACA
GGGACTAAAGTTTAGTCCTGGTATCCAAACTACCCTAGTGTACGTGTCATCTCCACGTTATTTACCATCATCTCTGTAGCTAACTTACACAATGATGATC
TCCACCAATACTTAGCATCAAATTCTAGAAAGTATTATTTATATATTGTGGGATCCTGCCATGCATGTGTTCTGCTGTACTCCCTCCGTCCAAAAAAACT
CAACCTAGACAAGGATGTGACATCTTCTAGTAAAACGAATCTGGACAACCCTTTATCCAGATTTGTTATACTAGAAAATGTCACATCCCCTCCTAAGTTT
AGGTGGTGTTTGGATCCAGGGACTTAACTTTAGTCTCTGTATTTAGACACTAATTTAGAGTATTAAATATAGACTACTTACAAAACTAATTATATAAATG
AAAGCTAATTTGCGAGACAAATTTTTTAAGCCTAATTAATCCATAATTAGAGAATGTTTACTGTAGCATCACATAGGCTAATCATGGATTAATTAGGCTC
AATAGATTCGTCTCGCGAAGTAGTCCAAGATTATGGATGGGTTTTATTAATAGTCTACATTTAATATTTATAATTAGTGTTGCAGCAACGGGGGTTCCCG
ATCTTTCGATGAGAGGAGGATAAACTTCGATTTGGGGGAGGACACGACGTTGGCGGTCCGACTACAACTACCACAGGGGTGCTGCGCCTTAGCAACCGGT
ACACCGACTCCACGTTGTTGCTGTTCTTGCCGTGCCAAGAACAACCTTGAACCTGCAAGCAATCGAAGAACAAGCAAGAACAAGTTGACAAGGAAACAGC
TCACGGCACTTGTCAAATGATGAAACTGAAACAAACCAAAATGGGGTTCTGAATACAAGTATCCGGGTGGTCTAGCCGACACACGCGAGTACAAGGAAGT
AGCTGCAGCTAAACTTACATCAAAACAAAACCCAAAATGCAAAATGGTGGCTGCTAGGAGTTTATATAGGTGGAGGAATGACCAGGAGAGGAGGTGGGAG
CAAACCCTAGGTTTTGTGGACCCCTAATGGGCTGTAAAGATACAAGGCCCAAGCCCAAGTTTCTGATGTAAAGAACTATTTTCGTCATTCTGAGCAGCCT
GGGTCAAATTTGATGGTGAGGCCACACATAGCTGAAAGTAGACGACGAGATCTTTCCAACAAGTACTCATTTGCCCCGTTTGCCCTCCGGAGTGAAGAGC
ATTGACTTCATCAAATCAGCGCTGCTAGTGCTGCTTGCGATCTGGTTCCTCTCCCATATTCCTAACAACAAGTAGATCACAACAACCATTTAGTAGCACC
CAATTCTGAGAAGAACTTGTATGATTAGCTAGGAATGACTTTACCTGATAATTAAGTTCACGAGCTCGAGCTCTAGTCATTGGTCCTTGCTGTGCAATAG
GCGTGGTTGTATCGTTGGAAGGGATGTCCTCATCATCCTCCCCTTCTTGCATTTGAGTCGTCCTCGACTCTAACTCATCTTCTTCTCCCAAATATGGCTT
TAAATCTGCAATGTTAAACGTGGGGCTAACCCCAAAATCGGCAGGTAGCTCA