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Detailed information on CNT3038903


BLAST search results

BLAST vs Swiss-Prot:
sp|P08474|RBS_CUCSA, E-value = 7e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712572Cucumis meloGlycine max26.5530.6984.08201forward
CNT30545373Cucumis meloBrassica napus26.6833.1180.2202forward
CNT3074985Cucumis meloBrassica juncea35.9359.9179.78272forward
CNT3050579Cucumis meloCucumis sativus24.8335.6794.68188forward

Expression of CNT3038903

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLFLRVTGKAAADLREWMKPFDASFFFPEG*

>peptide 2 (68 aa)
MNRCSQTWAASTWSSSVHRSQLPFPIARYSYQEGKKESRTSSIQVVATPKFQGKKKRRTNYSSTQTNI*

Sequence

>CNT3038903
AATAAACATAGTGGGATTAAACAGACAAACCAAAACGTAAAATGGAAAAATAGGAAAAAAAGAGTAAAGAAAAAAAATTAAAGGAGGGAAATTTGGTTGA
AACCACCCAAGTGATGAAGCTTTAAAAAAGGCAAATGGTTGAAATTCGCCTCAAGAAAGCCGCAGCATATGGAATTTAAGGAGATGTGTAGAATCTTGGG
GGCTTGTAGGCGATGAAACTGATGCACTGCACTTGACGGACGTTGTCAAAGCCAATAACCCTGATGTATGCGTCGGGGTATTCCTTCTTGGCCTCCTCAA
TCTCATTAACCACCTGAGATGAATCGGTGCAGCCAAACATGGGCAGCTTCCACATGGTCCAGTAGCGTCCATCGTAGTCAACTTCCTTTCCCAATTGCTC
GTTACTCATATCAGGAAGGTAAGAAAGAGTCTCGAACTTCTTCAATCCAAGTGGTGGCCACACCTAAATTTCAAGGAAAAAAAAAAAGAAGAACTAATTA
TTCATCAACTCAAACAAATATATAATTAATTAATAAAGAAATTGAATTTGATACCTTCATGCACTGAACTCTTCCACCATTGCTAGCCAAAGTGGTGATG
TCGTTGTTCTTGCGAGTGACGGGGAAAGCAGCGGCGGATTTGAGAGAATGGATGAAGCCATTTGATGCCTCTTTTTTTTTTCCCGAGGGTTAGAAGGATT
TACTAATAGCTAGTAGAGTAGTTTGAAGAAGCTCTTGCTGTTGAGTCTGAGAGGCAT