Detailed information on CNT3097992


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616300Solanum tuberosumSesamum indicum56.1217.4380.95252forward
CNT30728471Solanum tuberosumCorchorus capsularis23.396.9485.71105forward
CNT30380865Solanum tuberosumManihot esculenta26.7317.1283.33120forward
CNT30488443Solanum tuberosumOlea europaea27.1715.6681.15122forward
CNT30157858Solanum tuberosumPistacia vera61.2522.1478.18275forward
CNT30568460Solanum tuberosumActinidia chinensis25.6113.582.61115forward
CNT30511436Solanum tuberosumSolanum lycopersicum100.4547.8393.79451forward

Expression of CNT3097992

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MASYPFAFTHLSNCIDHAFVVAALRDRKPAVGLHADHCYIGGITDGSSDPAGD*

>peptide 2 (53 aa)
MRTIATSAGLPTAAPIPPAISPATIFFDKGMMLVSGSVHFCFSISYKPILVVE*

Sequence

>CNT3097992
AGTCACATGTGTCCCAAGCCCATCCTTCATTATCCCCTTCTCGAGGATAGTCTCTTTGAACTGATCGTACGATGCTAGCTGCGATGCGGTAACTAGCATG
GCTAGTTACCCCTTCGCTTTTACTCATCTGAGTAATTGCATCGATCACGCTTTTGTAGTTGCGGCGTTGAGAGATCGGAAGCCGGCCGTCGGCTTGCATG
CGGACCATTGCTACATCGGCGGGATTACCGACGGCAGCTCCGATCCCGCCGGCGATTAGTCCGGCAACGATCTTCTTCGACAAAGGCATGATGTTAGTAT
CTGGATCCGTCCATTTTTGCTTCAGCATATCGTATAAACCCATTCTGGTTGTAGAGTAAAGTGTCTGCCGGAGAACAGTAGCTGATACACCGGAGAACAA
AGCAGCAACACCTTCTTGTTGAATAATCTTAACACCTACAGAAACCGGT