Detailed information on CNT30117212


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XIH7|PLT1_ARATH, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370787Oryza nivaraOryza glumipatula24.7417.86100120forward
CNT30576940Oryza nivaraOryza barthii53.430.72100259forward

Expression of CNT30117212

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVMALDSDRKVMEMTPLVTRPARAPGAGRSPSCTPT*

Sequence

>CNT30117212
GTTAGTTTGATCAGTTAGTGGCGGCCATTTCCACCTTCTTCTTCTCCTTGGCTGGCTCGTCTGATTCCGAGGCGGCGGCCGTGTCGCCGAACAGCTTGCT
CATCTCCTCCAGCGTCCGGCCGCGGGTCTCCGGGAGGTAGGTGTAGAAGAACACCCAGGCGAGCGCGGCGATGCCGGAGTAGAGGAAGAAGCTGCCGCCG
ATGGTGATGGCCTTGGACAGCGACAGGAAGGTCATGGAGATGACGCCGCTGGTGACGCGCCCAGCGCGCGCACCTGGAGCGGGAAGATCTCCGAGCTGTA
CACCCACGTGATGGGGCCAAGGCCGATGGAGAAGAAGGCGACGTAGGCGAGGGTGGAGAGCGTCTTGGTGACACCGACGGCGCAGGTGGTGCCGAGGAGG
TGGTTGTCGTCGGTGATGCCGGCGCTCTTGAACACGCGCGGGCTGTAGAGCACGACGGAGTCGATGCCCGACGCCTGCTGGAAGA