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Detailed information on CNT30370107


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XTG7|HCAR_ORYSJ, E-value = 3e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101529Oryza glumipatulaOryza rufipogon10083.1499.53212forward
CNT30576171Oryza glumipatulaOryza barthii10081.8599.06212forward
CNT30116500Oryza glumipatulaOryza nivara10065.6399.53212forward

Expression of CNT30370107

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRNVVGVTKPTLAAVVLGWVDATRRDGLGSLPPILPQCPN*

Sequence

>CNT30370107
CCTCGACACGGGACATGCCATCTCCTAGGAATGCGCAGGCATTCTTGACATGCGCAATGTAGTAGGTGTCACAAAGCCCACATTGGCTGCAGTGGTCCTT
GGCTGGGTAGACGCCACCAGGAGGGATGGCCTTGGATCTCTCCCTCCAATCCTCCCGCAGTGCCCTAATTGACCCGCAACTCGTTTTCCTACCTCGGCAT
TGATGAGAGGAC