Detailed information on CNT30576171


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XTG7|HCAR_ORYSJ, E-value = 1e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370107Oryza barthiiOryza glumipatula81.8510099.06212forward
CNT30101529Oryza barthiiOryza rufipogon98.4610099.61255forward
CNT30116500Oryza barthiiOryza nivara10080.1999.61259forward

Expression of CNT30576171

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRNVVGVTKPTLAAVVLGWVDATRRDGLGSLPPILPQRPN*

Sequence

>CNT30576171
CCTCGACACGGGACATGCCATCTCCTAGGAATGCGCAGGCATTCTTGACATGCGCAATGTAGTAGGTGTCACAAAGCCCACATTGGCTGCAGTGGTCCTT
GGCTGGGTAGACGCCACCAGGAGGGATGGCCTTGGATCTCTCCCTCCAATCCTCCCGCAGCGCCCTAATTGACCTGCAACTCGTTTTCCTACCTCGGCAT
TGATGAGAGGACGGAGACGAGGGTAAGACAGAGGACACTGAGCAGCAGGGCGGTTTTGT