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Detailed information on CNT30358309


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 4e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564557Lactuca sativaActinidia chinensis21.9852.7586.26211forward
CNT30510187Lactuca sativaSolanum lycopersicum19.6921.4381.48189forward
CNT30574379Lactuca sativaVitis vinifera22.621.8182.03217forward

Expression of CNT30358309

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPRDQQTNQLYPNHSRLGIHRSGRMVFEPKMGPSTSHGLVHTTSHFPIKFHNK*

>peptide 2 (39 aa)
GELGGIDPCIVSHRVIQMVQKVLQWSFPCYNCLNKKPKH*

>peptide 3 (36 aa)
MEPSAPSIAHRPWITSRARFLANASGSADKPAVSQP*

Sequence

>CNT30358309
GGCGAACTTGGTGGCATAGACCCATGCATTGTTAGCCACAGGGTCATCCAAATGGTCCAAAAGGTTCTCCAATGGTCCTTTCCCTGTTACAATTGCTTGA
ACAAAAAACCCAAACATTGAAAACATTGCTAGTCTTCCATTCTTGATTTCCTTCACTTTCAACTCGGCAAAGGTAACCGGGTCGTCAGCAAGTCCCAACG
GGTCAAAATACTGACCACCCGGGTACAAGTTGTTACCATCTCCAACACCATCGAGCCCGCCCATTAGGACCACTTGAAAACCGAGTACTGCTAGTATGCT
TTGTGCGTGGACCAGGTTAGGGTTGCCCAAGTAGTCTAGCCCACCTTCTGAGAAGATTTGGGATCCGGCTTTGAACCAAACGGGCTCCTTGAAATCCACT
TTGACCCATTTTGCAAGGACTTCGGGCGTGATGGAGCCCAGTGCTCCGAGCATTGCCCATCGCCCGTGGATCACCTCAAGAGCCCGGTTTTTAGCGAATG
CCTCGGGATCAGCAGACAAACCAGCTGTATCCCAACCATAGTCGCCTGGGAATTCACCGGTCAGGTAGGATGGTGTTTGAGCCGAAAATGGGCCCAAGTA
CTTCACACGGTCTGGTCCATACCACAAGTCATTTCCCTATTAAATTTCACAATAAATAATTAAATATCATCAGTTTACTGCAATGTTGCAAAAGTCGTTA
GAAGCTAGTTGATCTAAGGTTAGTCGAGATACATAAATTGTAAACCATTTAATTATAGAAAAATCAAATATAACCAAGATCCAAATACACATTTTCTACT
ACAAATACAACAATAATATTTTTAGACACATCTTTTAATTACAAAAATCAGATATGTAACATTTGAAAAAATTAATATTCTGTAATTTTTGGAGCTAATT
TTTCATTTATAAACATATTAACGGCAGCAGTGAATTTACATAAATGTTGTGAGAGGGATA