CANTATAdb - search

Detailed information on CNT30312696

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30379509	Camelina sativa	Manihot esculenta	31.59	57.13	83.57	761	forward
CNT30145472	Camelina sativa	Medicago truncatula	66.29	85.72	81.84	1597	forward
CNT30623607	Camelina sativa	Daucus carota	56.79	59.92	81.94	1368	forward
CNT30120672	Camelina sativa	Citrus clementina	55.04	72.74	80.24	1326	forward

Expression of CNT30312696

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLTSEDESLLIRGNSLLVLNLGFDIVNGV*

>peptide 2 (31 aa)
MVSELSTSRVMVLPVKVLTKICIPPRRRSTR*

>peptide 3 (31 aa)
MVSELSTSKVMVLPVRVFTKICIPPRRRSTR*

>peptide 4 (42 aa)
MKGGILLDVLVSKSSSVFKLLTSEYESLLVRGNSLFILDIGF*

Sequence

>CNT30312696
CTAATTTCTAATTTTCTAAGGAAACCGATGATTAACATACACTTGGATTATTATTTTACTGAATGTTGAAACACAGGCCCGATTACGAGCCCAACCAAAA
GGTTCATAAGAAATAAAAGAAAAGCAGAAAATATGAAACATGGAACACACAAACTAAACCACGCGAAGATCACCTCCCAAGTGCATTATACTTGAACCAC
CACTTTCAATCAGATCACAACAGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTTGACTCCTTCTGGATATTGTAATCTGCAAGAGTC
CGACCATCCTCGAGATGCTTACCAGCGAAGATGAGTCTCTGCTGATCCGGGGAAATTCCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTGT
CTGAACTCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCACGGAGACGAAGCACAAGGTGAAGGGTCGACTC
CTTTTGGATGTTGTAATCTGCAAGTGTGCGACCATCCTCAAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGA
ATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAGGTCTTCACAAATATTTGCATACCACCACGTA
GACGCAAAACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCTGCAAGTGTACGACCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTG
ATCCGGAGGGATCCCTTCCTTGTCCTAAATCTTAGCCTTGACGTTATCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATGGTCTTGCCGGTAAGGGTC
TTCACAAAGATCTGCATACCACCACGTAGACGAAGCACAAGATGAAGAGTAGACTCCTTTTGGATGTTGTAATCCTCTAGGGTGCGTCCATCCTCGAGCT
GCTTCCCAACGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCGATTGTGTATGAGCTCTCAACCTC
CAAAGTGATGGTTTTGCCTCTAAGGGTCTTCACAAAAATCTGCATACCACCACGTAGACGAAGCACCAAATGAAGGGTGGAATCCTTCTGGATGTTTTAG
TCAGCAAGAGTTCTTCAGTCTTCAAGCTGCTTACCAGCGAATATGAGTCTCTGCTGGTCCGGGGGAATTCCCTCTTCATCTTGGATATTGGCTTTTGACA
TTGTCGATTGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCACGAAGACGAAGGACAAGGT
GAAGGGTCGACTCCTTTTGGATGTTGTAGTCAGCAAGAGTCCTTCCGTCTTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTAC
TTCATTGTCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATAGTCTTGCCGGTAAGAGTCTTGACAAAGATCTGC
ATACCACCTCTTAAACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCAACGAAGGTACGACCATCTTCAAGCTGTTTACCGGCGAAGA
TCAATCTCTGCTGGTCCGGAGGTATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAAAGTGATGGTCTT
GCCAGTGAGTGTTTTCACGAAAATTTGCATCTGAAAAATAAAAAGCAAACAGAGATCAGATCAGCAAACATACGAAATCATAGCAACACCAAAGAGAACA
ACAAAGAAACCCAAAATTGAATAGATTGTCCTCGAAAACCCTAATTTTCTATGAGGATTTCAAAATCAAACAAGAAACTGGAACAGATCTACACGAGAAA
ACACACAATTGAATTGGATAGCCCTCAAAGACCCTAATTTTCTATGAGAATTTCAAGATCAAGCAATAAATTGAACAGATCTACATGATATAACACTCAA
TCGAAACGAGAAAGCGTAACAGAGAATTCGGCAACAAGCAAATCCGACGAGCAACGAGTAGAGATTCAACAAAATCAAAAGAAGATTCAATAACCCAAAA
AAACCCAAAATCGAAAAGATCAGATGTGAAATCAAAACAAACGAATAAGAAGAAGAAGAAACATATATACCTTGAAAGAGTCGTTGGAAGAGAGAGTCGT
AAAAGATTTGCTGAGAACGACGATTTAGGGTTTGGGGAGAGAGAGATTGAAGAATCAGAGAAAGACGAAGGGGATGATAATTATGAGATCCTTCGAAGGA
AGCTCTTCT