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Detailed information on CNT30120672


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-124

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532384Citrus clementinaEucalyptus grandis74.8292.180.571364forward
CNT30381906Citrus clementinaManihot esculenta50.5880.1782.43922forward
CNT30538027Citrus clementinaBrassica napus74.1671.3180.621352forward
CNT30145547Citrus clementinaMedicago truncatula84.777.5979.991544forward
CNT30312696Citrus clementinaCamelina sativa72.7455.0480.241326forward
CNT30595410Citrus clementinaEragrostis curvula61.4982.1881.81121forward

Expression of CNT30120672

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVSELSTSRVIVLPVKVFTKICISNRAFSCERRKN*

>peptide 2 (48 aa)
MKGRLLLDVIIRKSPSILKLFASEDQTLLIRWNSFLVLDFCLDIVNCV*

>peptide 3 (56 aa)
PKSNKLIHDGTNNNPTKQRHKHNLTTISAFTTTKTEDKMEGGLLLDVIISKGTAVL*

>peptide 4 (60 aa)
MQGGFFLDVVIGQGAAVFQLLSGEDQPLLVGRDSLLVLDLGLHVIDRVGALDLEGNRLPG*

Sequence

>CNT30120672
AACCCAAAAGCAACAAACTAATTCATGACGGAACCAACAATAACCCAACCAAACAAAGACACAAGCACAACTTAACAACCATCTCAGCATTCACCACCAC
GAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTG
CTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAA
GTCTTGACAAAAATTTGCATGCCTCCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCA
ATTGTTTCCCGGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTCCAC
CTCGAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCATGCCACCACGGAGCCTGAGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTG
TAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCA
CGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCATGCCGCCACGGAGCCTGAGCACGAG
GTGAAGAGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCGTCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATC
CCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAATATCT
GCATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAA
GATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATTGTT
TTCCCAGTAAGGGTCTTAACAAATATCTGCATGCCTCCCCTGAGACGAAGAACAAGGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCGGCCAAGGTGC
GGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTAACGTTATCGATCGTGTC
TGAGCTCTCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCATGCCTCCGCGGAGACGAAGGACAAGATGGAGGGTTGACTCC
TTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGGAATTCCCTCCTTGTCTTGGA
TCTTGGCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCGGTCAAGGTTTTCACGAAGATCTGCATATCGAACAGAGC
TTTTTCTTGCGAACGAAGGAAGAATTGATAATTGTTGCGATCAAGATGATGAAATGATGAGTGAAGCGCTAGAGGTTCGTGCTTGGTTATATAGCAAAGC
TAACCGACTCGTTGAACGGTTCA