Detailed information on CNT30623607


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30511508Daucus carotaSolanum lycopersicum49.586.3983.11130forward
CNT30312696Daucus carotaCamelina sativa59.9256.7981.941368forward

Expression of CNT30623607

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MECRLLLDVVVGKGPAVLQLLTSEDQPLLVWGNSFLVLDLGLDIVNGI*

>peptide 2 (52 aa)
MSLCWSGGIPSLSWILAFTLSIVSELSTSRVIVFPVKVLTKICIPPRRRSTR*

>peptide 3 (37 aa)
MVSELSTSRVIVFPVKVLTKICIPPRSRRTRWSVDSF*

>peptide 4 (40 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRNTRWSVDSFWML*

>peptide 5 (85 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVFTKICICTSHKHKIKTIFINSTTNEFPDPHPYLHNTRNKTYTMNQLNITFYQFSN*

>peptide 6 (54 aa)
MIRTNHLKEIETYEQTDEQIQILTNIYSFYLINREIAYITQRRETERERYLPCN*

>peptide 7 (72 aa)
MECGLLLDVVVSQSPAIFELLTSENKTLLIRRNAFLVLDLGFDVVDCVRTFHLQGDGLSGQSFHKDLHLHIT*

Sequence

>CNT30623607
GCAAATACCTGAAAAATCATTAAGCACTATTTTCGTTATTCGAACTTAGATCTAAACCGGTTGTTGCAATCTAGACATAACATAGACATATATCAGGGAT
CTTCAACACGCATATATAAATGTTATATAAAACATAACAATTACTTGAAAACCAACAAGCAAATTACTAAAAAACAAGTTTATTCACCAACACTTGAATA
ACCACAGTAACTGTTCTTCCCACACAAGGAGCTTAAACAAAGTTCATAAAAAAAGGACAAATTCATCAGACACCAACTAGGAACACTGCTCAGAAATTGC
CACCACGGAGACGCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGAGTCCTACCATCCTCAAGTTGCTTTCCAGCAAAGATCAA
CCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTATCTGAACTCTCCACCTCTAGGGTTATAGTCTTGCCG
GTCAGAGTCTTCACGAAAATCTGCATACCACCACGGAGACGCAACACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCGT
CCTCCAACTGCTTACCAGCGAAGATCAACCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCTGAACT
CTCAACTTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCATACCACCACGGAGTCGGAGAACCAGATGGAGTGTTGACTCTTTCTGA
ATGTTGTAGTCTGCAAGAGTCCTGCCATCCTCCAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAG
CTTTCACATTGTCAATCGTATCCGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCTGTCAAGGTCTTGACAAAAATCTGCATCCCTCCACGGAGACGGAG
GACCAGATGGAGTGTTGATTCTTTCTGAATGTTGTAATCAGCTAGGGTTCTTCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGT
GGGATCCCTTCCTTATCCTGGATCTTAGCTTTCACATTGTCAATAGTATCCGAGCTCTCAACCTCAAGGGTAATAGTCTTTCCTGTCAAGGTCTTGACGA
AAATCTGCATCCCTCCACGAAGACGGAGCACAAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCGTCCTCGAGCTGCTTTCC
AGCAAAGATCAATCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCCAGAGTG
ATCGTCTTTCCGGTCAACGTCTTAACGAAGATCTGCATACCCCCGCGGAGACGGAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCA
GAGTCCTGCCATCTTCGAGCTGCTTACCAGCGAAAATAAGACGTTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGAT
TGTGTCAGAACTTTCCACCTCCAAGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAGATCTGCATCTGCACATCACATAAACACAAAATTAAAACAATT
TTTATCAATTCAACAACTAACGAATTTCCAGATCCGCATCCGTATTTACATAACACACGCAATAAAACCTATACGATGAATCAATTGAACATCACGTTTT
ATCAATTCAGCAACTAACAAAATTCCAGATCATCCGCATATACATAATACACACAATAAAAAAGAATCAATTAAACATCTAACAAAATTACAGATCAGGA
TCTATATATTTTCCATAAGTATGTAACGAAATTATCATGTAGATCTGTGTATATATTGTTACAAAATTAGAGGAACGAATTGATGCGTTCAGATCTTGAC
ATAAACTTACAGATAGATACACAATCAGATGAACAAAGACGATGTATTCAGATCTGTATGTACATGTAAAGATTAATACATAATGATACGAACAAATCAC
CTAAAAGAGATCGAAACATACGAACAAACAGACGAACAAATACAGATCTTAACCAACATCTATAGCTTCTATCTAATCAATAGAGAAATAGCATATATAA
CGCAGAGGCGAGAGACAGAGAGAGAGAGATATTTACCTTGCAATTGAAGAGAAAAGAGATTTGTTGTGTTGGGTTGAGAGGAG