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Detailed information on CNT30233940


BLAST search results

BLAST vs Swiss-Prot:
sp|P36210|RK121_ARATH, E-value = 9e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30310574Brassica oleraceaCamelina sativa32.1923.9289.33150forward
CNT30573129Brassica oleraceaVitis vinifera23.1844.0885.19108forward
CNT30724786Brassica oleraceaLupinus angustifolius32.1915.4882.67150forward

Expression of CNT30233940

Peptides detected in this lncRNA

>peptide 1 (70 aa)
SASSFVTPSLNFFGSPSISSFASFNAKLVNALTALITAIRELLGTSLITTSNSVCSSATERGVTPNLSWR*

>peptide 2 (65 aa)
LSFILRHTFLELLRQPFDKLLRFLQRQASQRPHRLNHRDTRAARHLVNHHIELRLLLRHGERRDA*

>peptide 3 (80 aa)
MRASSRVRDEISDPIFSIFSGDSTAARGRRWVARWVSVEEEEERPKRDGNSSVVGREKKGWAAVRVGDDEERIMLAVERVV

Sequence

>CNT30233940
CTCAGCTTCATCCTTCGTCACACCTTCCTTGAACTTCTTCGGCAGCCCTTCGATAAGCTCCTTCGCTTCCTTCAACGCCAAGCTAGTCAACGCCCTCACC
GCCTTAATCACCGCGATACGCGAGCTGCTCGGCACCTCGTTAATCACCACATCGAACTCCGTCTGCTCCTCCGCCACGGAGAGAGGCGTGACGCCTAACT
TGTCCTGGAGGTAGTCGACGAGGATGCGGGCTTCTTCGAGGGTGAGGGACGAGATCTCGGATCCGATTTTCTCGATTTTCTCCGGGGATTCGACGGCGGC
GAGGGGGCGGAGGTGGGTGGCGCGGTGGGTTAGTGTGGAGGAGGAGGAAGAAAGACCGAAGCGAGATGGGAATTCGAGTGTGGTGGGTCGGGAGAAGAAG
GGATGGGCGGCGGTGAGAGTGGGAGATGATGAGGAAAGGATTATGCTTGCGGTGGAGAGAGTCGTC