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Detailed information on CNT30299368


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 6e-49

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30131032Triticum aestivumLolium perenne59.7857.9293.53278forward
CNT30346179Triticum aestivumEragrostis tef50.7544.1192.8236forward
CNT30592819Triticum aestivumEragrostis curvula49.8939.6693.53232forward

Expression of CNT30299368

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MARHLLATTETEHQVEGGLLLDVVVSEGAAVLELLTSKDEALLVRRDALLVLDLRLDIVNRVRGLDLKGDGLAGEGLHKDLH

>peptide 2 (64 aa)
EAQVQGSLIHSFHSSSKSAAVRKFTDTTKHKYITLDHSTVATKHKTRRGHTDNPIGGHRKATDL*

>peptide 3 (30 aa)
GGTSSGLTYSFISQFIQICCGQKVHGHNQT*

>peptide 4 (43 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVRVFTKICI

>peptide 5 (32 aa)
RHKFRAHLFIHFTVHPNLLRSESSRTQPNIST*

Sequence

>CNT30299368
GGAGGCACAAGTTCAGGGCTCACTTATTCATTCATTTCACAGTTCATCCAAATCTGCTGCGGTCAGAAAGTTCACGGACACAACCAAACATAAGTACATA
ACACTAGACCACAGCACGGTAGCAACAAAGCACAAGACCAGACGAGGACACACTGACAATCCGATCGGAGGACACAGAAAGGCAACCGACTTGTGAGCCC
ACAGACATAAGCAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGG
GTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCG
TGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC