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Detailed information on CNT30556070


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENA9|RK32_ORYNI, E-value = 6e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30294219Oryza glaberrimaTriticum aestivum27.6893.5793.75320reverse complement
CNT30219967Oryza glaberrimaHordeum vulgare18.9450.8190.41219forward

Expression of CNT30556070

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRIRQEFFNILYIFFRLCFNNIEYIQRFSI*

>peptide 2 (47 aa)
MILILLKNKIVLWKNKSFSSKDFYEYAFLTSKYVFLELPFKKEITFF*

Sequence

>CNT30556070
GGCTAAGTTGAAATAACAGGTTTATTAAAAGAATATTAAGTTATTTTCTCGCGAATCGTCGAGATTGGAAGATTCCATAGAATTTAGGACATTAGAATCT
TCATTAAAATAGACTTCGTTTGGTAGTATCGTTGCGAATTTTTTAACAAAAAAATTCTTGCTTTGCCCAATAGAAACTTTGAAAGAGTTGGAACAATTTT
TTCTCAGTTGCAATATAGAACTAATTTTTTTGTTAATTTAGGATAAGATAGGTAGAAGTTGTAAGTCTTATTGCAGGAATACTCTACTTTTCATAATAGA
ATCCCCTTTTTTTATTTATTATACGGATTCTATTACGAAAAGTTCATTGATAGGAAAAGAATATTTAGGTCACAGTATACCAAAAACCCTTTTTTTATAT
ATCAGAGAGGTTTGTTCTAAGAATATTGTACCGAGGAATTCGACACATAAAAGTAAACTCATTAATTAATCCTAATTATTCCTAATTATTCATATTAAAT
AATTGGAATTTTTTGGGGATAGGTCAATTCATATTATCCCAAAACCCTATTATTTGTTTGTTTGTTGCCGAGAAAAACCCTTTGGTTTTGGATGCTCGCT
GACGCCAGAAAATGATCTTGATTTTGCTAAAGAATAAGATTGTACTATGGAAAAATAAGTCTTTTTCTTCCAAAGATTTTTACGAATACGCTTTTTTGAC
ATCGAAGTACGTTTTTTTGGAACTGCCATTCAAAAAGGAAATTACTTTTTTCTAGTTGTATGTGAAAGACATCTATTGCCGCAAATCAATCCATCTTTCT
TCTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTGAATTCTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTA
ACATATTATATATTTTTTTTAGACTTTGTTTTAATAATATAGAATATATACAAAGGTTTTCTATTTAAATCAATTTATATTTCAAGTATACTCTCCATAT
ACAGATATAAGGTATGGGGGCCTATCCCCCATATAAGACGGGAGGATAAAAGGAAGGGAAAATTCAATCAAATAGTTAATTAAAGTATTCCAGAATTGAA
TTCCAATCAATTTGAGTTACGAAACAAGGGAGCTGCTTCATTTTAATACAAAAAAA