Detailed information on CNT30265236


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520646Brassica rapaSetaria italica22.0917.6483.5291forward
CNT30372911Brassica rapaArabidopsis thaliana50.7326.7390.43209forward
CNT30273403Brassica rapaChenopodium quinoa255.3985.44103forward
CNT3074458Brassica rapaBrassica juncea51.739.66100213forward

Expression of CNT30265236

Peptides detected in this lncRNA

>peptide 1 (86 aa)
GHLNPFDRQFLSQFDVGSFHGLAKRAPRSVKHNQPRLFAVTKLQQILNPSSAQCNHIAAFEDIMHNSRPHSLALASSHHHLPSLSC*

Sequence

>CNT30265236
GGCCACCTTAATCCCTTTGACCGCCAGTTTCTCAGCCAATTCGACGTAGGAAGCTTCCATGGCCTGGCAAAACGGGCACCAAGGAGCGTAAAGCACAACC
AACCACGGCTCTTTGCGGTTACCAAGCTTCAACAGATTCTCAATCCCTCCTCTGCTCAATGCAACCACATTGCTGCTTTCGAAGATATCATGCACAATAG
CAGACCACATTCTTTAGCTTTAGCATCTTCCCACCACCACCTTCCTTCTCTCTCGTGCTGACCCGGAAGCACGGGCCTAGTGCACGGCTCACACCCAATA
GAAACATACCCTTGCGCGTGCAATGCATTCACCGGAACGTCCATCGTCCTCAAGAAGTTCCAAACATCACCACCTTCGACATTAGCCAAAGGATTCCACT
TGACAAGACTCC