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Detailed information on CNT30372911


BLAST search results

BLAST vs Swiss-Prot:
sp|P92981|APR2_ARATH, E-value = 4e-167

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3074458Arabidopsis thalianaBrassica juncea71.48104.182.65559forward
CNT30265236Arabidopsis thalianaBrassica rapa26.7350.7390.43209forward

Expression of CNT30372911

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSESTSLCSEGYLIARGALFGKRSIVGKLPN*

>peptide 2 (61 aa)
MLPSPGRKGTKERKVRPTTPLYGSLASKDSQPLLCSMQPHCCFQISLAQQQALSLQHHLPP*

>peptide 3 (88 aa)
MFPLCRPHSLALASSHHHLPSLSCWPGSTGLVHGSHPIDTYPCACNAFTGTSIVLRKFHTSAPSTLAKGFHFTRLPTPPSNPSNTGST*

>peptide 4 (30 aa)
DVHNIITKMKSLLHLNSLSFFITLFLFSIS*

Sequence

>CNT30372911
CTGACGTCCACAATATTATAACCAAGATGAAATCACTCCTTCATCTCAATTCTCTTTCATTCTTCATCACCCTCTTTTTATTTTCTATCTCATAACTCAC
CGAAGAAGATTCACAAACGACATGAGTGAATCAACATCTCTATGCTCTGAAGGGTACTTAATAGCCCGTGGAGCTCTTTTCGGAAAGAGAAGTATCGTCG
GGAAGCTCCCTAACTGAAGCTCTTGCTTAGCAAACTCCTTCTGCTCACCGTCAGCTCGGAATTTCGCCACTTTAACTCCTTTTCCCGCAAGTTTCTCAGC
CAATTCGATGTACGATGCTTCCATCGCCTGGCAGAAAGGGCACCAAGGAGCGTAAAGTACGACCAACCACGCCTCTTTACGGTTCTCTAGCTTCAAAAGA
TTCTCAACCCCTCCTTTGCTCAATGCAACCACATTGTTGCTTTCAAATATCTCTTGCACAGCAGCAGGCTTTGAGTCTGCAGCACCATCTTCCTCCTTGA
TGTTCCCTTTGTGTAGACCACATTCTTTAGCTTTAGCATCTTCCCACCACCACCTTCCTTCTCTCTCATGTTGGCCTGGAAGCACCGGCCTAGTACACGG
CTCACACCCGATTGACACATACCCTTGTGCGTGCAATGCATTCACCGGAACATCCATAGTTCTCAGAAAGTTCCACACATCAGCTCCTTCAACATTAGCC
AAAGGATTCCACTTCACAAGACTTCCAACACCGCCATCTAACCCTTCAAACACTGGATCAACCTGAACAATAGGGATCTCAG