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Detailed information on CNT30520646


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4A7|APR1_ORYSJ, E-value = 1e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30265236Setaria italicaBrassica rapa17.6422.0983.5291forward
CNT3013766Setaria italicaZea mays50.3931.493.08260forward

Expression of CNT30520646

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGLAVRLGNRSTVGKLCSCSSACANGFCSPSARNLATFTPESASFSASST*

>peptide 2 (30 aa)
SSVTNSPTSYKYINNLDLLPYTTGPSDRER*

>peptide 3 (57 aa)
MAWQKGHHGAYSTTSHGSARFSRPSRFSIPVRVRDTTAGLSKMSGAPAEPLPLADLGA

Sequence

>CNT30520646
ATCCTCTGTCACCAACTCACCCACTAGCTATAAGTACATAAATAACCTCGACCTTTTGCCCTACACCACCGGACCTTCAGACAGAGAACGATGACTCTCG
CTCCCTGGCGGCCTCTCACCGGAGGCTGTTGACGAAGGCGAGGAGCGAGTCGACGTCCCTCTTCTCGGACGGGTACTTGATGGGCCTGGCGGTGCGGCTC
GGGAACAGGAGCACGGTGGGGAAGCTCTGCAGCTGCAGCTCCGCCTGCGCGAACGGCTTCTGCTCGCCGTCGGCGCGGAACCTGGCCACCTTCACACCGG
AATCCGCCAGCTTCTCCGCCAGCTCCACGTAGGAGGCCTCCATGGCCTGGCAGAAGGGGCACCACGGCGCGTACAGCACCACGAGCCACGGCTCCGCGCG
GTTCTCCAGGCCCAGCAGGTTCTCGATCCCGGTCCGGGTCAGGGACACCACGGCGGGGCTCTCGAAGATGTCCGGGGCGCCCGCCGAGCCGTTGCCGTTG
GCGGACTTGGGCGCCG