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Detailed information on CNT30409644


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08184|RBS4_MESCR, E-value = 5e-73

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-07

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727208Papaver somniferumCorchorus capsularis18.6720.4582.22180forward
CNT30712618Papaver somniferumGlycine max18.9831.3481.97183forward
CNT30261182Papaver somniferumBrassica rapa7.0521.7988.2468forward

Expression of CNT30409644

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MDTCMQLTLPPLLATEVISFDLRVTGNAETDFKPLNGATMLA*

>peptide 2 (38 aa)
MNIAIIEQRKNNRIKRYYYHRCSYIHSNPFKDTNNIIR*

>peptide 3 (36 aa)
MILMKEPGYAALASSSSLITWEASVQPNMGSFHIVQ*

>peptide 4 (31 aa)
MGEGMRGSQTSSNQLVAIPVCAQIQTLMSTI*

Sequence

>CNT30409644
GTATAATTGGATGAGCGGATATTGTTATTATCAAAAAAATTAAAACAGATGAATATTGCTATTATCGAACAAAGAAAAAACAATCGGATTAAACGATATT
ATTATCATCGTTGCTCATACATACACTCGAATCCATTTAAAGATACGAATAATATAATACGCTAAAACCGAATTAGGGAAGAAATTAAAACAAAACAAAA
AATAAAAAGACACAGATTAAAGTGTGCGTGGCTTCATCTTTTACTGTTCGTAGCTGGTACTCTCGGGCTTGTATGCGATGAAACTAACACATTGTACTTG
ACGAACGTTGTCGAATCCGATGATTCTGATGAAAGAGCCTGGGTATGCAGCCTTGGCCTCTTCTAGCTCCTTGATAACCTGGGAAGCGTCGGTACAACCG
AACATGGGTAGCTTCCACATTGTCCAGTAACGACCATCGTAGTATCCAGGGGTGTTACCGTGTTCTCTGTAGACGAATCCTCTGGCGTCGAATTCCAAAC
AGGGAACCCATCCATTACGGAGAAGGTAGTCAACTTCCTTTGATAGTTGTTCGACGGTCAATGGGGGAAGGTATGAGAGGGTCTCAAACTTCTTCAAACC
AGTTGGTGGCCATACCTGTTTGTGCACAAATTCAAACATTAATGTCAACAATCTAAATGAGGGATGAAAATCATAAATCCCTATAGAGTTTAAACTTTGA
GTTACTAAATGGATACCTGCATGCAGTTAACTCTTCCACCGTTGCTGGCAACAGAGGTGATATCGTTTGATTTGCGGGTAACTGGGAATGCGGAGACGGA
TTTCAAGCCGCTGAATGGTGCAACCATGCTAGCTTGAGCGGGAGCGGAGCTCCTTACGGAGGCGACTGCAGCAGAGGAAATCATTGAAGAAGCCATTTCT
TTTTTCTTTTCACTTCTGTGTGTTTAGCCAAGAAGATTTCCAAGGAATTAATAGGCATTCCTCA