Detailed information on CNT30254360


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 6e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30460404Avena sativaSaccharum spontaneum53.8614.7991.24468forward
CNT30364225Avena sativaSorghum bicolor53.8661.592.09468forward
CNT30150477Avena sativaBrachypodium distachyon53.7434.991.65467forward

Expression of CNT30254360

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPSLSWILALTLSMVSEDSTSRGDGLASEGLDKDLHTTTEA*

>peptide 2 (30 aa)
MVLPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 3 (30 aa)
AAGVSPLEANSPTRRNQIDGKSRKNHHPTN*

>peptide 4 (44 aa)
MRRCWSGGMPSLSWILALTLSIVSEDSTSRVIVLPVRVFTKICIC

>peptide 5 (85 aa)
MRQGSPTDDQGPPAAAIPRHLLTTTKTEHQVEGGLLLDVVVSKGTAILQLLASEDQALLVRGNALLVLDLGLDIVDGVRGLHLKG*

>peptide 6 (40 aa)
QQEYHHWRQIVQPEEIKSTVNQEKITIQRTRISKAAGVNH*

Sequence

>CNT30254360
TGCAGCAGGAGTATCACCATTGGAGGCAAATAGTCCAACCAGAAGAAATCAAATCGACGGTAAATCAAGAAAAAATCACCATCCAACGAACTAGAATAAG
CAAAGCAGCAGGAGTAAATCATTGACATAAGAACTAGAGGGAAACAATCCAACAGTGAACCAGAAGATACCAAATCAACAGTAAATCGAGCACAGGCAGA
TTACACCGAAGTTCACTTATTCATTACTACAAACTGCTGTAACAGCAATTGTTTTCACGATACCAACACATAGGGGGGACTCTGTTCCATTACTGAAGAC
ACAACTTGACACAAACGAGACAGACTTCACTTCAAGGGCGACATGCGACAGGGCAGCCCAACCGACGACCAAGGACCACCAGCAGCTGCAATACCAAGAC
ACTTACTGACCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTCCAGCTGCTTGCCAG
CGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGGTGA
TGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATACCACCACGGAGGCGTAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAG
GGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATA
GTATCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATCTGC