CANTATAdb - search

Detailed information on CNT30364225

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 9e-77

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30254360	Sorghum bicolor	Avena sativa	61.5	53.86	92.09	468	forward
CNT30666357	Sorghum bicolor	Triticum dicoccoides	61.76	56.42	90.21	470	forward
CNT30461506	Sorghum bicolor	Saccharum spontaneum	64.78	41.46	91.48	493	forward
CNT3067610	Sorghum bicolor	Leersia perrieri	62.16	26.59	89.43	473	forward
CNT30349330	Sorghum bicolor	Eragrostis tef	61.24	30.06	90.77	466	forward
CNT30576670	Sorghum bicolor	Oryza barthii	61.63	56.03	91.04	469	forward

Expression of CNT30364225

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLPYKYFRLTNASMTDHTDTSKTGHGRNKRH*

>peptide 2 (37 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICICR

>peptide 3 (50 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVLTKICMPPLRRSTKWRVDSF*

Sequence

>CNT30364225
TGACATAGCAAAAAACAATATTCAACACATATTTTAAATTCCAACATCACATTTATTTAGAATTAAGCCATATGCTGCCGCACTATAGTTTAGGGTAGAA
CACAGAGGAACACAACCGGTCCATGAAACGAACTCAGACACGACACAGACCATACAAATGCTTCCATACAAATACTTCAGACTGACCAACGCTTCAATGA
CGGACCATACAGATACTTCAAAGACTGGACATGGCCGAAACAAGAGGCACTAGACAACCCAGGTGCGGCAGCAGCTTCAACGACTGATGGCTTACTGACC
ACCGCGAAGACGGAGCACCAGGTGGAGGGTGCTCTCTTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGA
CGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGG
TCAGGGTCTTGACAAAGATCTGCATGCCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGCAAGCGTGCGGCCGTC
CTCAAGCTGCTTGCCAGCGAAGATAAGCCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCAGAAGAC
TCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCAGAG