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Detailed information on CNT30150477


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690921Brachypodium distachyonOryza sativa34.9829.0991.67468forward
CNT30254360Brachypodium distachyonAvena sativa34.953.7491.65467forward
CNT30107350Brachypodium distachyonOryza longistaminata34.9854.2391.03468forward

Expression of CNT30150477

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVKVFTKICICRRIPRQHGKPPRVDKQSTRTKQKV*

>peptide 2 (44 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVKVFTKICIPPRRRRTR*

>peptide 3 (44 aa)
MKPISHGKRKILSNATVIKDQIKPQELMQISRQIIMPNFTYAFS*

Sequence

>CNT30150477
CCACAGTTTAAAAACTAAAATACAGATCTGCAAGACTTCCAGGTCACATGGTCAGATAAAAACATGAAGCCCATATCACACGGTAAAAGAAAGATACTAA
GCAACGCAACAGTGATCAAAGATCAAATCAAACCACAGGAACTGATGCAAATAAGCAGACAGATTATAATGCCAAACTTCACTTATGCTTTCTCATAGTA
CTTAAAACCATACTGCTATAGCAGTAACTGTTTGCACGAAACCAACAGACACTGGGGGGACTCGATGGTCCATCAACCAGACACAGGTAGACTTAACACG
AACTGAGACAGATACTTCAGAGGGCAAGAGCAGACCATTACTGACCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC
AGCAAGGGTGCGGCCATCCTCCAGCTGCTTTCCTGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG
TCAATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATACCACCACGCAGACGCAGGACAAGGTGAA
GGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTC
CTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATC
TGCAGAAGAATCCCCAGACAGCATGGTAAGCCTCCACGAGTAGACAAGCAGTCAACACGAACAAAACAGAAAGTATAAACATATAGATACGCCTCCATAC
ATCCTATCCAAGATAATCAAAACAATAGATAAGAAACATACAGATTAACAGATGAGACGCAAGCAATCAGGAATTCCATAAAAAAAATAGACAAGCACCC
GATTAACAATTCTAGATCTAGAGGTGATAAGGCCTGCGTATTCGAGATATTGACACGGATCTAACACAAACCAAAGATCTGACGCCGAAACTCATCATCG
GACCAGGAACATGCAGGAATCGAACAAATCTACCAGTAATTTCCGCCCCCAACGACTTGAGATTCGACGTAGCGGCTAGGGAACAACACGTAGACCTAGA
AGACGAGACGGGGTAAAGGGGGGGGGGGGGGGGTGAAGCAGCTCGGTACCTTGGGGAGGCGGGGGGAAGGAGATTCTTCGACGAGCCTCGAGGCGACCGG
AGACGAGATTTGGGGATCGGATTTGTTGGTTCCGTTCC