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Detailed information on CNT30460404


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-93

BLAST vs NONCODE:
NONMTRT002043, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670998Saccharum spontaneumSetaria viridis14.4468.9390.59457forward
CNT30302672Saccharum spontaneumTriticum aestivum14.650.0590.48462forward
CNT30254360Saccharum spontaneumAvena sativa14.7953.8691.24468forward
CNT30370319Saccharum spontaneumOryza glumipatula14.7667.5889.08467forward
CNT30107357Saccharum spontaneumOryza longistaminata14.661.8591.34462forward
CNT30583697Saccharum spontaneumEchinochloa crusgalli16.4328.2592.5520forward
CNT30116053Saccharum spontaneumOryza nivara14.7666.4391.43467forward
CNT30550711Saccharum spontaneumOryza brachyantha14.66690.26462forward

Expression of CNT30460404

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKSTSSANQPEPSRGFPGTDKLTIRTARLHVRTLTARI*

>peptide 2 (52 aa)
SRQLGTWRSDEHQPNKFVLIMHYFKRGNRKQPANLVQTSQHIHYLSHHNSFG*

>peptide 3 (53 aa)
MPSLSWILALTLSMVSELSTSKVMVLPVNVLTKICMPPLRRSTRWRVLSFWML*

>peptide 4 (38 aa)
MCIYGAVYSPIFWSDNLSTSVDVIKLLSYIGCYCFQKT*

>peptide 5 (47 aa)
MTLRAKSEDSFEILCLNFSNQDWKACASTVLCILQYFGQITCLLQLM*

>peptide 6 (73 aa)
MEVHQRAPDRRRYSSSLNDPWLTDHHGDGAPGGGCSPSGCCSQQGYGHPPAACQRRSDAAGLGGCPPCPGSWP*

>peptide 7 (76 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICICRRITKQQGEYQQKKQPQATKQHMKAGPKIHS*

Sequence

>CNT30460404
TCAGCAGACAGCTAGGAACCTGGAGGTCTGATGAACACCAGCCAAACAAATTTGTCCTAATAATGCATTATTTTAAGAGAGGTAACCGAAAACAACCAGC
GAACTTAGTTCAAACATCACAACATATTCATTATTTAAGCCATCACAACAGTTTTGGGTAGAACGCACTAGGACAACCGGTCCATTAAACCAAACTCAGT
CACGACTCATGACTTTGAGAGCAAAAAGTGAAGACAGCTTTGAGATTTTGTGCTTAAATTTCTCGAACCAAGATTGGAAAGCATGTGCATCTACGGTGCT
GTGTATTCTCCAATATTTTGGTCAGATAACTTGTCTACTTCAGTTGATGTGATCAAGTTGCTGTCTTACATTGGATGCTACTGTTTTCAGAAAACATAAT
GATCACAGAAACACTGAAGCATCCAGAAAATTTATCCTTGTAGAAAAATCTCAGTAGACTCCTTCACAGTAATAACATGGATCACTCAAATAAATAAAAT
GGTTCAGCAAAATTTTACATATCTTTTGGATTCAGCAAGAACTAGCAATCAGAACCCAACAACATAGCAACAACCAAACAATCAAACATGTTAAGCTGTG
AACCAGAATAAAAAACTGAGCTTTGACAGAAGCAAGTTAACATCCAACAAACCATCAAACATGTCAAGCTAGTTAAGAGTAAAAAACTGAGCTTGACAGA
TCCAAGTTAACATCCAACAAACCATCAAACATGTTAAGCTGTAAGGCAGAGTAAAAAACTGAGCTTGACAGAACCAAGTGACCATTCAGTAAGAAACGGT
AGATGGCCAGAACCCGGACGTCCAATTAACACCAGCCAATCAAATTTGATCTCAGGCAAATATTTGGAGATATAACCAAAAAAAAACACATTGAGCACAA
ACTTTTAAGTTCAAACATCAAACTTATTCATGATTCAAGCCATACTGCTGTAGAACAGTTTTGGGTATAAAACACAGGACACAACTGGCCCTTTAAACCA
ACTCAGTAACGACTCATGACACAAACCACAGATACTTAATAGACGACAACCTTCCATATGGAGGTACACCAGAGGGCACCAGACAGACGCAGGTACAGCA
GCAGCTTAAACGACCCATGGCTTACTGACCACCACGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCA
TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCAGAGC
TCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTG
GATGTTGTAGTCAGCAAGCGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG
GCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTGCAGAAGGATCACCA
AACAACAGGGTGAGTATCAACAAAAGAAACAGCCCCAAGCAACTAAACAGCATATGAAGGCAGGGCCAAAAATCCACTCATAGCTGCTGCATATGCCATC
ATCCAAGTATATCAAAAAGAATTAAAAAAGCATGCTTTTTATTAGATGAACAATAACTATTAAGCCGTAGCAGGATGTTGCTCCATGTATCCAAGCATGT
ATATATCTAAAAGTACTATCTAACAAAGTACCAGTAAAACCCGTAGCAACATATACACCTATCCTTATTTGTTTATTAGATAAACAAGAATTATTAAACT
GTAACAGCATGTTGCTTCATGTATCTATGCATGTACATATCTAACAAAGTACCAGTAAAACCGACAGCAACATATATACATATCCATCTTATATCTGAAA
GATGAAGAGATATTTACATCCATCATAATTTTGAACATATGTGACACTAATACAGATCCAAATTTAATAAATATAAACCGACAGGTATTCTGAAACAGTA
TAATCTGATCTACGGCCCAATCAGACAAAACCAAACCAAAAGAAAGGCATGCTAAAAATTACGACCTGATCTGATAATTAAGTGCACAGGATGTAGCTAG
CTCGATCAAACCATATCAAAGGTATCATACAACGGATAGATTAAACGGAACTAGCCAACGAAACAAGACATCGCAGATCATGAAATCGACATCATCTGCG
AACCAGCCAGAACCATCCCGAGGATTCCCAGGTACTGACAAGTTAACAATCAGAACAGCTCGCCTCCATGTACGAACCCTAACAGCGCGGATCTAACCCG
ACTCCACAGCCTAGGGTACTAACCATGGATCACCGATCTCGAACCATCCGAAATTAAATTAATGTCCTAAAGGGACTATAAATCGCAAGAGCATGACAAT
TTAACCATCATATAACGTCATCAGATCTATTGTGCCTCGCAGCCATGAAAAAACAGGAACAGAACGGCCCTAACCATGGATCGCCGATCTAGTCTAGAGA
AGAGAAGTTGAGAGAGAGAGAAGTTAGAGAGAGAGGGAGGGAGGATGATCGCCGTACCTTGAAGCGGGGATCGACGAGGCTCGCGAGGAGAGACGACAGG
ATTGGGGATCGGGTTTGTGTGTGCGCTCCGAACAACACGAGAGAAGATGAGGGTTGGCTATTTATAACGGCGGGCGAGGAAGGGAAAGGGCAGGAGCGGT
GGGAAAGGAATTCCCCGTGCTGTGCGGTGCTGCCGGTGCCGTGACGGTTTCGTGCCGTGTGAGAGGAGCGAGGAGGCGGAACGGACTTGGAAACCGCCAC
CGGTGGAGGTGGAGGTGGAGCGGAACTCTCGAGAGGGGGCCACAGAGATGCGGATGCCGTTGCCGCGCCAAGGTGTCAACGTCTCTCGGCCGTGACGTCG
GCTTCGCTTGGCTCGGCGCTGGTGGTTCGCTGGTTGGTGTCCGTTAGACTTGCCGACGCCGTTAAACGGGCTCATTGACGGTAATGGTCGTTTTGGAAAG
GGACATACTATGGACTTCTGAAACCAAAGTCAAACAAAAAATGGTAGAATCAAAGGCTGTGTTTA