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Detailed information on CNT30394909


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30251599Triticum turgidumAvena sativa21.5112.488.7580forward

Expression of CNT30394909

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDMQVCDHVNIHKNNKSGSFVKFAVLLHNPV

>peptide 2 (59 aa)
FGLMERLGEGKKPTAIIAEVADDLELDLVVLSMEAIHSKHVDGNLLAEFIPCPILMLPL*

>peptide 3 (40 aa)
MSSVSFWGAFIISDEIPDYFMDMMMHFGLAISWICRFVIM*

Sequence

>CNT30394909
GTTTGGGTTGATGGAGCGCCTTGGAGAAGGAAAGAAGCCGACAGCTATCATCGCAGAAGTCGCAGATGATTTGGAGTTAGACCTGGTCGTCCTTAGTATG
GAAGCGATCCACTCGAAGCACGTCGATGGGAATTTGCTGGCTGAATTCATCCCCTGCCCCATTCTGATGCTCCCCCTCTAATAATGTCATCTGTTTCTTT
TTGGGGGGCTTTTATCATTTCAGATGAAATTCCTGACTATTTCATGGATATGATGATGCATTTTGGGTTAGCTATTTCATGGATATGCAGGTTTGTGATC
ATGTGAATATTCATAAGAACAATAAGAGTGGTTCCTTTGTGAAATTTGCTGTTCTGTTGCATAATCCTGTCA