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Detailed information on CNT30245169


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 5e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30665715Avena sativaTriticum dicoccoides47.3246.7689.67397forward
CNT30684632Avena sativaTriticum urartu50.0648.8989.52420forward
CNT30112551Avena sativaFicus carica51.7370.1182.03434forward

Expression of CNT30245169

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLIDPSTTYKYTCISHPVVGRLANSFNFQGRSW*

>peptide 2 (35 aa)
MENMARRPFLSSLTLSSAAVSGSSARPSGSKAPPG*

>peptide 3 (46 aa)
MPFLDKISGNTHPSAPSIAHLEWMTSSSLFLANVSGSADNPAVSHP*

Sequence

>CNT30245169
ATGCAATCCACAGACATTGATGATATATTTAAAAATAATAGATCCGTAACAACGTAAGGGTACTCTGCTAATATAGTTTAACAATCTTCAAGACTCTTAT
AGCGATTGGTATAGCACCACGCCAAAGATCCCTGGTGAATAGATAAAGTACATCCAGTTACTACATGTTGATCGATCCGTCCACGACGTACAAGTACACA
TGCATATCCCATCCGGTGGTCGGACGGTTGGCTAACTCATTTAACTTCCAGGGGCGAAGTTGGTAGCGAAAGCCCATGCGTTGTTATTCACAGGGTCGGC
AACGTGGTCGAAGAGGTTCTCGATAGGTCCCTTGCCGGTGACGATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGGCG
GTGTCCGGATCGTCGGCGAGGCCAAGTGGGTCAAAGGCGCCGCCCGGGTAGATCTGGTCGAGGCCCTCGCCGAGCGGGCCGCCACCAACACGGTAGCCCT
CGATGAAGCCCATGAGCACGACTTGGGTCGCCCAGATGGCGAGAATGCTTTGTGCGTGCACAAGGTTGGGGTTGCCTAGATAGTCGAGACCGCCCTCGGA
AAAGATCTGAGCGCCAGCCTTGAACCATACGGCCTCACCGAACTTGATGCCGTTCTTGGACAAGATCTCGGGAAACACACATCCAAGTGCGCCAAGCATC
GCCCACCTCGAGTGGATGACCTCGAGCTCCCTGTTCTTGGCAAACGTCTCTGGGTCCGCCGACAACCCTGCGGTGTCCCACCCGTAGTCGCCGGGGAACT
CGCCAGTCAAGTAAGATGGGGTCTGCTCCGAGAATGGGC