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Detailed information on CNT30665715


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 6e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521860Triticum dicoccoidesSetaria italica53.3640.4192.72453forward
CNT30245169Triticum dicoccoidesAvena sativa46.7647.3289.67397forward
CNT30116676Triticum dicoccoidesOryza nivara51.8341.6791.36440forward

Expression of CNT30665715

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRYLGRSGPYLHIHPSISTVH*

>peptide 2 (77 aa)
LFLRTLTLSSAAVFRSSSRPSGSKRFSTGPFPVTMACTKKPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

>peptide 3 (86 aa)
MFGGGREKRSMGHASSTYQMLWGALLTVRRMVMRPPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACELSEMNWWMVCVWV

Sequence

>CNT30665715
GCTGTTCTTGAGAACTTTGACCTTGAGCTCAGCCGCGGTGTTTAGGTCGTCGTCGAGGCCAAGTGGGTCGAAGAGGTTCTCAACGGGTCCCTTTCCGGTG
ACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGG
CGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCGCCGAGGGGGCCGCCACCAACGCGGTAGCCCTCGATGAAGCCCATGAG
CACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCG
GCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGTGAGTGGA
TCACCTCCAGCTCCCGGTACTTGGGACGGTCAGGGCCGTACCTACACATTCATCCATCCATCAGCACGGTGCATTAGTCCTGTGATATATGTTCGGCGGG
GGGAGAGAGAAGAGAAGCATGGGACATGCTAGCAGTACGTACCAGATGCTCTGGGGCGCGCTCTTGACGGTCCGGCGCATGGTGATGCGGCCGCCGAAGT
CGCCGACGCTGCGGACGAGGTCATCGCGCCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAGCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGC
TGCCTGCGAGCTCAGTGAGATGAACTGGTGGATGGTGTGTGTTTGGGTG