« Back to Triticum urartu search


Detailed information on CNT30684632


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522165Triticum urartuSetaria italica55.7652.2487.27479forward
CNT30187906Triticum urartuSecale cereale58.5663.1192.05503forward
CNT30245169Triticum urartuAvena sativa48.8950.0689.52420forward

Expression of CNT30684632

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 2 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 3 (32 aa)
ELEVPYTPCQLMILSNDTRFFHPFPRAHLVLN*

Sequence

>CNT30684632
TGAGCTTGAAGTACCATATACGCCATGCCAGTTGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAA
TTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTA
CAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACCGGCTCGGCGGCGGTGTCGGGGTCGTCGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCGCCGAGGGG
CCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCC
AGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACA
CGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTGTC
CCATCCGTAGTCGCCGGGGAACTCGCCGGTCATCGCGCCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAGCGCCGACGCGGCCATTTCGCTGGT
GGCTGGGGCTGCCTGCGAGCTCAGTGAGATGAACTGGTGGATGGTGTGTGTTTGGGTGG