Detailed information on CNT3024461


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43191|LOX15_SOLTU, E-value = 6e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020541Populus trichocarpaCitrullus lanatus13.5635.7784.0988forward
CNT3071772Populus trichocarpaQuercus suber48.5417.5982.22315forward
CNT30431245Populus trichocarpaPapaver somniferum41.7629.0580.07271forward
CNT3031367Populus trichocarpaTheobroma cacao22.0320.0683.92143forward

Expression of CNT3024461

Peptides detected in this lncRNA

>peptide 1 (29 aa)
ETFNTQYSRSLHLSLPSCKRSVDSTGGGR*

>peptide 2 (50 aa)
MIMVHVCVTSTSVCISGHHGSSFLSPWPTLQISVHHDWSSLSPWIKSSVG*

>peptide 3 (91 aa)
MRGRGREQPRIWHSNQQNRVIAHSLLILQKHGNMVQLLNFSPDCKTASFEISQMPPVVHYPKSIQQYLSVQGRLHLDFSQAQHTQGSLVQA*

Sequence

>CNT3024461
GTGAAACTTTCAATACTCAATATTCGCGCTCTTTACACCTGTCACTTCCGTCCTGTAAGAGATCAGTAGATAGCACTGGAGGAGGGAGATGAGAGGGAGA
GGGAGAGAGCAGCCTCGAATCTGGCATAGCAATCAGCAAAACAGAGTCATCGCTCATTCCTTGTTAATTCTGCAAAAGCATGGAAATATGGTTCAACTTC
TGAATTTCAGTCCAGATTGCAAAACTGCTTCCTTCGAAATCTCTCAAATGCCGCCAGTGGTTCACTATCCAAAGTCCATTCAGCAGTATCTCTCTGTCCA
AGGTAGGCTACATCTGGATTTTTCTCAAGCTCAGCATACTCAGGGGTCCCTGGTTCAGGCATGAATCGACGGCTTAAGGATGGACGGTTAGGGAGGTAGC
CAGCGTAAGGGTATTGCCCAAAATTGACAGCTGCATGGAGGGCTGAAGCTATCCATATGATAATGGTGCATGTTTGTGTGACATCAACTAGCGTCTGCAT
CTCAGGCCACCACGGTTCATCTTTCTTGTCACCATGGCCTACATTACAGATCTCTGTCCACCATGACTGGAGTTCACTATCTCCTTGGATCAAATCATCT
GTGGGGTAGTAGAAAGCACAATATTCCTTAACCCACGTTTCAATTGCTG