Detailed information on CNT30242401


BLAST search results

BLAST vs Swiss-Prot:
sp|O65581|ALFC5_ARATH, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30443030Avena sativaAegilops tauschii22.8220.8397.27110forward
CNT30370572Avena sativaOryza glumipatula20.7540.9892100forward
CNT30116996Avena sativaOryza nivara23.0333.3390.09111forward

Expression of CNT30242401

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HVLVLLNMIEHIKWGLAFRDHLYIISRFWLNI*

Sequence

>CNT30242401
TGCATGTACTCGTTCTCCTTAACATGATCGAACATATAAAGTGGGGGCTTGCATTCAGAGACCACTTATATATCATTAGTAGGTTTTGGTTAAACATATA
GGAGCAAGGGGGAAAGGAGGGAGAATTGAAGTACACCCGCAGGAAGGAAGGAAGCACATATATCTGCACACGGATTGCGTCGAGGCCACCACCGTGCACG
CACGCAGGCACGGTCCAGGCATGGCGAGGTACGACTAGTACTTGTACCCAGACACGTGTAAGCTCTCGGAGGCGGCGGCGTCCCCGCCGGCGGCGGCGCC
GGCGTACTTGCCGAGCGTGGCCTCGGAGTTGCCCTTGCACCGGGCGAGGAAGGTGGCCTGCGCGTCTGCGACGTTCTCCGTGGCCTGCTCCTCGCTCTGC
CCGCCCGACAGGAACACCACCCCGGGCACCGCCGGCGGCACCGTGCGCCGCAGCGCCGCCACCGTGTACTCCGCGATCACCT