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Detailed information on CNT30210007


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617683Helianthus annuusSesamum indicum12.523.1985.4296reverse complement
CNT30570482Helianthus annuusVitis vinifera6.7722.1388.4652reverse complement
CNT3023971Helianthus annuusPopulus trichocarpa15.127.6286.21116reverse complement

Expression of CNT30210007

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMQRGVNCWRTLGFLVRYGTVRRRMCRSIPFSRP*

>peptide 2 (32 aa)
MEPSAAACAVQSPSVVLSYLVTAAIRVSKTQT*

>peptide 3 (29 aa)
MSNYGVYTVYVCGDGNYKYISTYSFAEVY*

Sequence

>CNT30210007
CTTCCACTCCTTTTAACCCTAACCGAAGCCCCCTCTCAATGAATTGCTGCCTTTTGAATCCAAACTCATCTTCATCATTCATCACTTAATCAGGTTAAAC
ATATCTCAAACCAGATCTACTATTTCTTCACAAATTTCGAACAATATCTATACATACATATACAGAGGCTGAGGTGAATCGTCGGCAAGTTTGTATGATG
CAGAGAGGAGTTAATTGCTGGAGAACGCTAGGGTTTCTGGTTCGATATGGAACCGTCCGCCGCCGCATGTGCCGTTCAATCCCCTTCAGTCGTCCTTAGT
TACCTGGTAACGGCGGCGATTAGGGTTTCAAAGACACAAACGTGATTTGGATACCGGAGCTGCTAGGTATGATTTGGATTGGTTTGGGATTATATTCAGA
CCTAGCCCTAGACAGTCTGATTGTATGATTGTTGCCGGTACTCTCATCAACAAGATGGCCCCTGCTTTGAGAAAGTATGTTCTTCTAATTCTCACTCTTA
TCTGATATCTGTATATAGAAATTAAAGCTTTTGTATTATGTATAATATTGTATAGGGTTTGATGAGTAACTATGGAGTGTATACTGTTTATGTTTGTGGG
GATGGTAACTATAAATATATAAGCACATACAGTTTTGCCGAAGTTTATTGACCTTATAGATTTAAAGGAAAGAAAACTGGTGGTTAGTTAGAATGTTTTG
AAGGTCAGGCTTTGTTTTTTATACTTGCGTTCTATGTATCGATGTCTTTGAAGAGCATATTAGTATTT