CANTATAdb - search

Detailed information on CNT30538981

BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30235137	Brassica napus	Brassica oleracea	94.64	84.81	95.98	547	forward

Expression of CNT30538981

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLAKVSGSAERPAVSHP*

>peptide 2 (33 aa)
LRNEVRFLINHTKIRQRKFNKYTNNLFRCCSLA*

>peptide 3 (42 aa)
MVTRPVPKTSEAPGESFTAFPAKAGEDRAMVEAAIRNFLDLF*

Sequence

>CNT30538981
TTGAGAAATGAGGTTCGGTTTCTGATAAATCATACAAAGATACGACAAAGGAAGTTTAACAAATATACAAACAATCTCTTTCGCTGCTGCTCACTCGCAT
GATAATAACCTTTTAATTCATTCACTTTCCAGGGACGAAGTTGGTGGCAAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAAATGCTCAGGGAAAACG
CAGCCTAGGGCTCCGAGCATGGCCCATCTGCAGTGGATCACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGAAAGACCGGCGGTGTCCC
ATCCGTAGTCACCAGGGAACTCTCCTGTGAGGTAGCTCGGGGGCTCTCCAGAGAATGGACCCAAGTACTTGACCCTGTCGGATCCGTACCATGGGCTGCC
AGATGGACCTGTGGGTTTGACGGTTTTTCTCATGGTGACACGCCCGGTTCCAAAGACCTCGGAGGCTCCTGGTGAGAGCTTCACGGCCTTTCCGGCAAAG
GCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAGAAATTTTCTTGATCTTTTTTAGTTTTTGTGTTTTTTTTTG