Detailed information on CNT30225957


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179942Hordeum vulgareSecale cereale26.4720.3391.28149reverse complement
CNT30287498Hordeum vulgareTriticum aestivum24.1611.8990.44136forward
CNT30386082Hordeum vulgareTriticum turgidum24.1617.2490.44136forward
CNT30436110Hordeum vulgareAegilops tauschii26.4713.6189.93149forward
CNT30243586Hordeum vulgareAvena sativa20.4317.8393.91115forward
CNT30581069Hordeum vulgareEchinochloa crusgalli21.3114.1284.17120forward

Expression of CNT30225957

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MEDGGAPGGDGVGGAPRLGLLLPHRRRRRRTRTQKQRSLR

>peptide 2 (29 aa)
WIFLLGSYHADISDCFPDPWVGISGRRWL*

>peptide 3 (41 aa)
MVPWRMEARLAETVWVALLGWVSSCLTVAGDVARALRSSDLS

>peptide 4 (43 aa)
MRWCHGGWRRAWRRRCGWRSSAGSPPASPSPATSHAHSEAAISP

>peptide 5 (45 aa)
MQIFRIAFQTRGLEFLVGDGSKIFPLTKHLGHLRGRSPTTGWWMP*

Sequence

>CNT30225957
GTTGGATTTTTCTTTTAGGGTCTTATCATGCAGATATTTCGGATTGCTTTCCAGACCCGTGGGTTGGAATTTCTGGTAGGAGATGGCTCTAAGATATTTC
CCCTGACTAAGCATCTCGGACACTTGCGAGGCCGCTCCCCAACGACTGGTTGGTGGATGCCCTGAGCGGCCGCCGAGCTTTCTCGTTGGCAGTGTACAGC
GCTAGAGCTTGATATTTGTATAGCATAAAAATCGAGAGATATTTGTTGCCACGGATTGAAAGGTGAAAGGGATCCATCTTCCATCAAACTATTTCTTCTC
GTCTACCTGCACAGGGTCCCAACACCAATTCCTTCAGCTTCAATCATTTCTTCATCAGGGCAACAGGGAGAGGCTTCGATCTGCATCATAAGAAGGGAGG
TGCCTCTCATCTCAGTTGTGTTGTGCTTGGATGCGATGGTGCCATGGAGGATGGAGGCGCGCCTGGCGGAGACGGTGTGGGTGGCGCTCCTCGGCTGGGT
CTCCTCCTGCCTCACCGTCGCCGGCGACGTCGCACGCGCACTCAGAAGCAGCGATCTCTCCGT