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Detailed information on CNT30287498


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30181113Triticum aestivumSecale cereale27.6241.5289.87316forward
CNT30225957Triticum aestivumHordeum vulgare11.8924.1690.44136forward
CNT30386082Triticum aestivumTriticum turgidum68.9710099.62789forward
CNT30436110Triticum aestivumAegilops tauschii42.3144.289.88484forward

Expression of CNT30287498

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPFLVKLPPEILNHYTLTVLSLVINIKTH*

>peptide 2 (35 aa)
MATAITTTSATYFFLLCLHPATPIPLASTFVFRPL*

>peptide 3 (67 aa)
MPLKSRQEEGSASPRSEVVVLLDAMVPWRMEARLAATVRAALLGWLFFCLTVASDVARQLRSSDLSV*

>peptide 4 (74 aa)
MRWCRGGWRRGWRPRCGRRSSAGSSSASPSPATSHANSGAAISPSKAGRVDIAGGKEQTLRLRSATPSGAQEED*

>peptide 5 (53 aa)
MDWKVKGMGDGYCHYYHIRHLFLLALLAPCNTNSFSFHFRLSTPMTSATPRGW*

>peptide 6 (60 aa)
RFSDRALTGCTPEQFGHPVVDALRSRTLERPLPAYLAVDVLSSRRAIIASIQCIELRFLA*

Sequence

>CNT30287498
CGCGGTTTAGCGATCGGGCATTGACCGGATGTACGCCCGAGCAATTTGGGCACCCGGTCGTAGATGCCCTGAGATCTCGGACACTTGAGAGGCCACTCCC
AGCCTACTTGGCTGTAGATGTCCTGAGCAGCCGCCGGGCTATCATTGCCAGTATACAGTGCATAGAACTCAGATTTTTAGCATAAAAATCGAGAGATATT
TGTTGCCATGGATTGGAAGGTGAAAGGAATGGGTGATGGCTACTGCCATTACTACCACATCCGCCACCTATTTCTTCTTGCTTTGCTTGCACCCTGCAAC
ACCAATTCCTTTAGCTTCCACTTTCGTCTTTCGACCCCTATGACGTCTGCCACTCCAAGAGGATGGTGAAGAACTGAAGATTCATGCCTCTTAAGAGCAG
ACAGGAAGAAGGTTCTGCCTCACCAAGAAGCGAGGTTGTGGTGTTGCTGGATGCGATGGTGCCGTGGAGGATGGAGGCGCGGCTGGCGGCCACGGTGCGG
GCGGCGCTCCTCGGCTGGCTCTTCTTCTGCCTCACCGTCGCCAGCGACGTCGCACGCCAACTCAGGAGCAGCGATCTCTCCGTCTAAGGCCGGCCGCGTT
GACATCGCCGGCGGCAAAGAACAGACTCTGCGTCTACGAAGTGCCACTCCATCTGGTGCACAGGAAGAAGATTGATTTACAGCAGGGTAACCAGATGCGA
TTTTGCAACGAACCCGCAGTTAGGTGCAGGTGCTCGTCTTTAGAAGACGGTTGTCCTTGAGACTCATTGAGCAGATGATCCCTGTAAATTTTCAACTAAA
GCGTGTTGTTCCTTGGCTCATTTTGGGGGGTCAGCATGGTTAATTTCCAGCTAGCATCACTGACTACGACCTGAAATGCCTTTTTTGGTGAAATTACCAC
CTGAAATACTAAATCATTACACCTTAACGGTTTTGTCATTAGTTATTAACATTAAAACCCATTAGGGGGTCCAGCTCCACTTTTAATCTGAAATGTGGGT
CCCATGATGAGATGGCCTAGCAAATAATTATTGCCGTCGGTCTCATGTGGGGCAAAACGCCCTCTAAATCACCTCACATGCTCTCAGGAGTCAGGAGCCG
GATTATTTTAATGTTTTTTTGTAATGTTTGAGGATAGTAGATTC