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Detailed information on CNT30581069


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225957Echinochloa crusgalliHordeum vulgare14.1221.3184.17120forward
CNT30576919Echinochloa crusgalliOryza barthii11.8823.4986.14101forward
CNT30117160Echinochloa crusgalliOryza nivara11.8822.986.14101forward

Expression of CNT30581069

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MVPWRMEVSLAEMVWAMLGGWVSSFLAIADDVARALRSGDVAN*

>peptide 2 (57 aa)
MEDGGVPSGDGVGDARRLGFLLPRHRRRRRARPQERRRRQLGFSLGHSLIRVVSDSS*

>peptide 3 (50 aa)
MLHRGLFSSICIPPKMRPRLHKFAYSGIETAQRVQRSPAHATGALQRVSW*

Sequence

>CNT30581069
CTTCGTGTCTTGTTTACTTGCCCGAGCTCTTTTGCTTGTAGCCTCGGGAGACTACTCCTGAGGATGGCGAAGATTCCAGTCAGCTGAGAAGAAGATTCTT
CTTGCATACTTTGCTAAAAAGAGACAGGAGCTGCCGTTGCGCAAGCTAGTTGTTGATGGTGCCATGGAGGATGGAGGTGTCCCTAGCGGAGATGGTGTGG
GCGATGCTCGGCGGCTGGGTTTCCTCCTTCCTCGCCATCGCCGACGACGTCGCGCGCGCCCTCAGGAGCGGCGACGTCGCCAACTAGGCTTTTCACTCGG
CCACTCGCTCATTCGCGTCGTCAGTGATTCATCTTGAACCAGGATATCAAGTTAATTTTCGTGTGTAGGTGCATGATCTTACATAGTTTGATCCCGTGGG
CATTTTCTACATGCTACATAGGGGTTTGTTCTCAAGCATATGTATCCCTCCTAAGATGAGACCAAGGTTGCACAAATTTGCATATTCCGGTATTGAGACT
GCTCAACGCGTACAGAGATCTCCTGCACACGCCACTGGGGCGTTGCAGAGAGTGTCTTGGTAGCACTGTGCTTCGGACATTCGTTCACCAGGTGAGATGC
TCAAACAGTCGAACCCACCCGAGTTCAGCGAACCTGCACCGGCAGCTCACCACGGTCGGCTTTGACCGCTTGACGACCCGGCCGCAATTTGGATTCCAAA
ATACAGTAATTCCAGGGAATAGTGAAGAGATTACACTCAGCCTAGAGTTGCCCATCTGTTGTTGGACGTTCACGTCGTCAGTGAATTTTACTGAAACTGA
GGCAAATTTATGTTTTGCAACTCTGTACTCATAATCAAATTATATTCTGG