Detailed information on CNT30243586


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225957Avena sativaHordeum vulgare17.8320.4393.91115forward

Expression of CNT30243586

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRWCHGGWRHAWRRRCGWCSSAGSPHASPSPATSPMPSEAMTSPSRLILTSPEERSNPTSAKWARHPAHRARK*

>peptide 2 (43 aa)
MVPWRMEARLAETVWVVLLGWLSSCLTVASDVAHAIRSNDLSI*

>peptide 3 (32 aa)
MHSWNYGVQKEGRYIRILTRYKAGGSYYLSLNA

>peptide 4 (82 aa)
LQPSETLIPQENVKGPYPLKGSTRHEEDSAPSRRKLLPVVPGCDGAMEDGGTPGGDGVGGAPRLALLMPHRRQRRRPCHQKQ*

Sequence

>CNT30243586
CTCTCCAGCCCAGTGAGACTCTGATACCCCAAGAAAACGTTAAAGGTCCATACCCGTTAAAAGGCAGCACGAGACACGAAGAAGATTCTGCCCCATCAAG
AAGGAAGTTGCTTCCTGTTGTTCCTGGATGCGATGGTGCCATGGAGGATGGAGGCACGCCTGGCGGAGACGGTGTGGGTGGTGCTCCTCGGCTGGCTCTC
CTCATGCCTCACCGTCGCCAGCGACGTCGCCCATGCCATCAGAAGCAATGACCTCTCCATCTAGGCTAATTTTGACATCACCAGAGGAAAGAAGCAACCC
TACTTCTGCAAAGTGGGCACGTCATCCGGCACACAGGGCAAGGAAATAGGGCTGCAGCCGGCTAACCAGTTGCTCTGCACAGTGTTCATCCATAGAAAGA
CTAGTTCGACGTAGAAGGCACAGTGTTCATCTATAGAAAGTCAAGTTCTATGTAAAAGTGAAATTCTCTAATAGCATAGATGTGAAATATTGTCAAACAA
GAAATAGCTATTTCTGAAAGTGTCCTCGATTTCTAACAAAGATAGCATGCATAGCTGGAACTATGGAGTTCAAAAGGAGGGGCGGTACATACGGATTCTA
ACACGTTATAAGGCAGGAGGTTCCTACTATCTGAGCTTAAATGCT