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Detailed information on CNT30304420


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673936Triticum aestivumSetaria viridis35.8735.6187.67146forward
CNT30225382Triticum aestivumHordeum vulgare61.1847.0790.36249forward

Expression of CNT30304420

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MACRDMPRKASMARRPFLISLSLSSFISFSLLV

>peptide 2 (60 aa)
MHAARVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGEDVVVDGV*

>peptide 3 (29 aa)
PPNCTYDNQKRSGERKTQMLMKMTRDAMH*

Sequence

>CNT30304420
GCCGCCTAATTGCACGTACGATAACCAGAAGAGGAGCGGGGAAAGAAAGACACAGATGTTGATGAAGATGACGAGAGATGCAATGCACTAATTTTCGTAG
CACGATATAAATATTACAAGCATGCACGCAGCACGCGTACAAATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCACGTTTCCCACG
ACGACGGGTACCATGCACAGGACGACGATGCTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTTGTTGACGGGGT
CTGAGAGATGGCCTGCAGGGACATGCCGAGGAAGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGCTC
TTGGTCC