Detailed information on CNT30225226


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30398207Hordeum vulgareTriticum turgidum24.4717.0890.29103forward
CNT30435801Hordeum vulgareAegilops tauschii24.473.8595.15103forward
CNT30254148Hordeum vulgareAvena sativa20.678.1886.2187forward
CNT30660752Hordeum vulgareTriticum dicoccoides22.333.6786.1794reverse complement
CNT30150096Hordeum vulgareBrachypodium distachyon22.3314.3189.3694forward

Expression of CNT30225226

Peptides detected in this lncRNA

>peptide 1 (32 aa)
VLLISFLNIMGICGLSLNYNAPSRSTCMWFLV*

>peptide 2 (52 aa)
IVDFISEYHGDMWAVSELQRALEEYLHVVLGLTVKGVPTQQQQQRRGRGGRP*

Sequence

>CNT30225226
GTATTGTTGATTTCATTTCTGAATATCATGGGGATATGTGGGCTGTCTCTGAATTACAACGCGCCCTCGAGGAGTACCTGCATGTGGTTCTTGGTTTAAC
AGTGAAAGGAGTACCTACTCAGCAACAGCAGCAGAGGAGGGGCAGAGGAGGCCGACCATAGGCGGGGCGAGTTCGTGTCGAATACGAGCTGCAGGTGGTC
GAAGCAGTAACAACAGTAGGCGTCAGTGGCGCTTGTGGCTCCGACCACCGCGTAAAGATGGGGTGAGGCCTTCACGGAGGCCACAGGTGGCCGTGGCGGT
GGGAGAAGGTGTTGGAAATATGCCCTAAAGGCAATAATAAAATGGTTATTATCATATTTCCTTGTTCATGATAATCGTCTATTGTTCATGCTATAATTGT
ATTAACAGGAAATAGTAATAC