Detailed information on CNT30254148


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225226Avena sativaHordeum vulgare8.1820.6786.2187forward
CNT30437597Avena sativaAegilops tauschii11.1929.8284.03119forward
CNT30679632Avena sativaTriticum urartu10.5420.8684.82112reverse complement

Expression of CNT30254148

Peptides detected in this lncRNA

>peptide 1 (53 aa)
DPTRCPTLQRVDPANPVAAKLPSPSPSFPYCRLDLAPTPPAPFSRGRLLLARH*

>peptide 2 (38 aa)
MPVMVPQRPAVDADPEPGSRRASHVQLRGCKIQSKKKC*

>peptide 3 (30 aa)
MFVDNAIVLSVSQLQPTQFRTWLMIMINLL*

>peptide 4 (66 aa)
MPVPRPELAKTDTPPWEPRPLRRPSHSTRAARRPRPVRQLPTSPGSRPSLWSWTVWCHSARAVRLP*

>peptide 5 (53 aa)
MPILSLAADEPLMSNYEVARFSQKRSAENFLRCGYVRRQRHRAQRLPATADSV*

>peptide 6 (88 aa)
WTQHAAQPCNELTPRTPSPPSSPRHRHPSPTAAWTSPLLLQPPSPAVASSSPATSPINGASSRLSCAAASPSTLVPTVVRLPRLQSHR*

Sequence

>CNT30254148
TGGACCCAACACGCTGCCCAACCCTGCAACGAGTTGACCCCGCGAACCCCGTCGCCGCCAAGCTCCCCTCGCCATCGCCATCCTTCCCCTACTGCCGCCT
GGACCTCGCCCCTACTCCTCCAGCCCCCTTCTCCCGCGGTCGCCTCCTCCTCGCCCGCCACTAGCCCCATCAACGGCGCCTCCTCTCGCCTTTCCTGCGC
CGCTGCTTCTCCATCTACGCTGGTCCCCACCGTCGTTCGCCTTCCTCGCCTTCAGAGCCACCGCTAGGGTGCCCCCCGTCCCTCTGCTCCGGCCACCACC
CCTCTGCCTCCCACGCCTCTTCCAGCCGCAGAGCCGACCGCCGCCTCCCTGAGCCGGCCGTCACCACGCCCACCCCGTGTGCGGCCGTCGTCCTTCCCCG
CCCTGCGTTCTCGCGATCGCTACTCGATGCCCGTCCCCCGTCCTGAGCTTGCCAAGACCGACACCCCGCCTTGGGAACCTCGTCCCTTGCGACGGCCGAG
CCACTCTACCCGAGCCGCGCGACGTCCGCGACCAGTCCGGCAGCTGCCGACTTCCCCAGGATCTCGTCCTAGCCTCTGGAGCTGGACCGTGTGGTGCCAC
TCTGCCCGAGCCGTGCGACTCCCGTGACCAGTCCGACCGCCCTGGGCTCCTCTTCCTCAATCTACGCATGCATCTAGAGTATGCAATTGGCTGCTTACCG
GTGCCCACATGCCAGTGATGGTGCCACAACGTCCTGCCGTCGATGCCGATCCTGAGCCTGGCAGCCGACGAGCCTCTCATGTCCAACTACGAGGTTGCAA
GATTCAGTCAAAAAAGAAGTGCTGAAAATTTCTTACGATGTGGTTATGTTCGTCGACAACGCCATCGTGCTCAGCGTCTCCCAGCTACAGCCGACTCAGT
TTAGGACTTGGTTAATGATAATGATCAACTTGTTGTAATTGAAGGGAATATGCCCGAGAGGCAATAATAAAGTGGTTATTATCTTATTCCATGTTTATGA
TAAATGTTTATTTTGCATGCTATAATTGTATTGATCGGAAACATCAATACATGTGTGTTTAAT