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Detailed information on CNT30208990


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535866Helianthus annuusEucalyptus grandis18.0529.7683.78111forward
CNT30515361Helianthus annuusJuglans regia16.4222.8585.15101forward
CNT3091254Helianthus annuusSolanum tuberosum23.419.5383.33144forward
CNT30614251Helianthus annuusArabis alpina14.9632.3984.7892forward
CNT30624222Helianthus annuusDaucus carota21.315.4783.97131forward
CNT30724033Helianthus annuusLupinus angustifolius21.7911.9385.07134forward

Expression of CNT30208990

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLKTDHSPQLGIPNTLNLHILWSLGPKISI*

>peptide 2 (52 aa)
MLSNTPITSPVSGLLEVTLKVISPFPAAVFFMFSLSSSSSHPLPRHLSRCLR*

Sequence

>CNT30208990
AGTTTAAAGGCCAAGATAAGTTAGGACGTTGGTCGTAGGCCGGGTCAATCAATTTTACAAACACGAAAATATATCATAACATTCATTAATTATAAGTATT
CTTGATAATATACAAGCAAGAAATACATGGATGCTAAAAACTGATCACTCACCACAACTGGGCATACCAAACACCCTGAATCTTCACATCCTTTGGAGCC
TTGGCCCCAAGATCAGTATCTGAAGGCTGAATGCTCTCAAACACCCCAATCACCTCACCGGTTTCTGGCTTGCTAGAGGTCACACTAAAGGTGATCTCTC
CTTTCCCTGCCGCTGTGTTCTTTATGTTTTCTTTAAGCAGCTCCTCTTCGCATCCTCTCCCTCGTCATCTGTCTCGGTGTCTCCGGTGACAAAAGATACT
TGAATATTGTTTGCTTTTTGAGTTCACATCTTCGTCAGATCTACAAAAGTTATCGCAGGTTTACATGGGACGAATAGTGGATGTTTACAAGTTCTTGTGG
CTGGATTTTTCGTTTTTATTATAAGAACTTTTGGAACTTAAGTCTTATTTTGAATGTTTAGTTCTTTAAAACTTTGGATTGTTTTGAATAATTTGTGGTG
GATTGAACTTTGAAC