CANTATAdb - search

Detailed information on CNT30624222

BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 1e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535866	Daucus carota	Eucalyptus grandis	13.46	30.56	87.72	114	forward
CNT30547255	Daucus carota	Ipomoea triloba	21.84	35.58	81.08	185	forward
CNT30196966	Daucus carota	Pisum sativum	7.44	26.25	87.3	63	forward
CNT30508746	Daucus carota	Solanum lycopersicum	52.54	53.74	84.72	445	forward
CNT30614251	Daucus carota	Arabis alpina	14.4	42.96	83.61	122	forward
CNT30208990	Daucus carota	Helianthus annuus	15.47	21.3	83.97	131	forward

Expression of CNT30624222

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MLSNTPITSPVSGLLLVTLKVMQLRYRNQWNHLGLLGQERMNPCKMAQENLPKSYLVFQMLLAA*

>peptide 2 (33 aa)
VDNACIIIMQIGSSNLMPSLLHSSLLSLFITRS*

Sequence

>CNT30624222
GTAGATAATGCCTGCATAATTATAATGCAGATAGGATCTTCGAATTTGATGCCTAGTTTATTACATTCAAGCTTGTTAAGCTTATTTATTACAAGGTCTT
GATACTTGAAATTTAAAGGATTTTGAAGTTCTTATCCGATTATCATAATATACAATCAAGATAATAGTCTCAAAGCTTACGCCTTACAGGGTCAGTCGAG
ACTTCATCAACAAGATTATAGCACAACAAAATCTTAACCAAGAAACAAATTACAGTTGATTCTACCCTACTAATCAAGTTGAGCATACCATACACCTTGG
ATTTTCACATCCTTGGGAACCTTAGCTCCCAAATCAGTATCAGATGGTTGAATGCTCTCAAACACTCCAATCACCTCCCCAGTCTCTGGCTTGCTGTTGG
TAACACTAAAGGTAATGCAACTGCGTTATCGTAACCAGTGGAACCACCTCGGCCTTTTGGGTCAAGAAAGGATGAACCCCTGTAAGATGGCACAAGAAAA
TCTCCCGAAAAGCTATCTGGTTTTCCAGATGCTACTAGCTGCTTAATTGTGAAGAGGAAGGGCACACGCTCTCCGCCAGGAAGCTGAACTGTAACAGCAG
CATAATCAATTCCATCTTTCTCCTCAAACTTAACGCTTCCATCTGATGCAACCTCAAAGGGTCCCTCAATTTCATCTAGTGTATAGGTCAAGCGGGTCAT
AAGTTTGGTCTTCTGGAATTCAGGAAAAAAAAATGCATGAACAATCTGCGCCTGTCATTCATGATCAACTCCGGGGAACATCTACATAACAGTTTGTTGT
TATAGCAAAACTTTGTGTCTAATCACATACAGAAACTACAAGCGCAG