« Back to Secale cereale search


Detailed information on CNT30186758


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 6e-128

BLAST vs NONCODE:
NONSTUT001352, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393482Secale cerealeTriticum turgidum99.751.6894.12663forward
CNT30440257Secale cerealeAegilops tauschii93.8399.2196.15624forward
CNT30665014Secale cerealeTriticum dicoccoides95.3495.6394.64634forward

Expression of CNT30186758

Peptides detected in this lncRNA

>peptide 1 (36 aa)
QGRRQGRADQSYLPGRVGRRSHRVVHRQCGSPRRRP*

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSHP*

>peptide 3 (87 aa)
LRVVGKAERIKATSRVEWVDDLTEWSTGNAVALDGAHEHDLTSPDGKDTLRVHKAWVAEVVEAALAEDLGSSLEPNSLTKLNAIAGK*

>peptide 4 (47 aa)
MVTRASPKRDNDGKFFTTLPAKAGEESDMVVAAILIDGGPLCSVLQE*

Sequence

>CNT30186758
CTCAGGGTCGTCGGCAAGGCCGAGCGGATCAAAGCTACCTCCCGGGTAGAGTGGGTCGACGATCTCACCGAGTGGTCCACCGGCAATGCGGTAGCCCTCG
ACGGCGCCCATGAGCACGACCTGACAAGCCCAGATGGCAAGGATACTTTGCGCGTGCACAAGGCTTGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGA
AGATCTGGGATCCAGCCTTGAACCAAACAGCCTCACCAAACTTAACGCCATTGCGGGCAAGTAGCTCCGGGAAGACACAACCGAGCGCGCCAAGCATGGC
CCAACGGCAGTGGATCACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCGGGGTCAGCCGACAGCCCAGCGGTGTCCCACCCATAGTCGCCGGGGAACTCA
CCGCTCAGGTAGCTCGGGGGCTCACCAGAAAGTGGGCCGAGGTAGAGCACGCGGTCAGAGCCGTACCACGGGCTGCTAGAGGCAACCTTCTTGGCCTTTG
CCGCCGTCTTGCGCATGGTGACGCGGGCCTCCCCAAAAAGAGATAATGATGGCAAGTTCTTCACTACCTTGCCGGCAAAGGCTGGAGAAGAGAGTGACAT
GGTGGTTGCGGCCATTCTGATCGATGGAGGTCCTCTGTGTTCTGTTCTCCAAGAATGAGGAGTGG