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Detailed information on CNT30186677


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 8e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299798Secale cerealeTriticum aestivum75.7974.2393.21648forward
CNT30393931Secale cerealeTriticum turgidum75.4474.2293.33645forward
CNT30251180Secale cerealeAvena sativa77.0870.5686.8659forward
CNT30664294Secale cerealeTriticum dicoccoides73.3386.3696.81627forward
CNT30684844Secale cerealeTriticum urartu75.7973.0693.67648forward

Expression of CNT30186677

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

>peptide 2 (52 aa)
MSTTWQAQMARMLCACTRLGLPSMAQRQWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30186677
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGA
CTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCC
GCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGG
CGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGCCCTCCACGGCGCCCATGAG
CACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACGAGGCTGGGGTTGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGG
TTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCCCCGGGGAACTCGCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGA
GCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTC
GCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCT
AGCTTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTT