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Detailed information on CNT30251180


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186677Avena sativaSecale cereale70.5677.0886.8659forward

Expression of CNT30251180

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (36 aa)
MVMRPSPKGEALEAFMGVPAIAGEESAMVEAAICSL*

Sequence

>CNT30251180
AGGTTGTTCGGTGAAAACTTAAACTGCTTGGACTTTCAGAAAGTTCAGAGATCTTAAGTAGTATTGACATTCAGAGAAACCAATAGTTAAGCAGAAGAAG
AAAGATTCCTTGATGAATAACCATAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTGGACTCGCCTTAACATGATCCATCAGTGACGACAC
ACATGCAGCAGCAGCATCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCGAACTAAGCTCTTACTTGCCGGGG
ACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGT
CGACGATCTCACCGAGCGGGCCGCCGGCAACGCGGTATCCCTCGACGGCGCCCATGAGCACGACTTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTG
GACGAGGCTGGGGTTGCCGAGGTAGTCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCG
GCGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTAGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGT
CGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGCCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGC
CTTCATGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTTGCTCGCTCTGATCGAGGTGAGGTGTGCTTCGAGTGAGCTCG
GGTGGTAGGAGTTGCTGGTGTCTGTTGGTGCTGT