Detailed information on CNT30181605


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30306131Secale cerealeTriticum aestivum48.4715.2390.55127forward
CNT30384453Secale cerealeTriticum turgidum77.486.7582.76203forward
CNT30670174Secale cerealeTriticum dicoccoides48.4722.8490.55127forward
CNT30680086Secale cerealeTriticum urartu68.762.9487.22180forward

Expression of CNT30181605

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MEMCTTSLVDFAPCFGACVSACKRTCMCLCICFCLL*

>peptide 2 (41 aa)
RPWAGAPSWAIGILLVAPLLTKCCCYCDGRSEKAWRCAPHL*

>peptide 3 (42 aa)
APGLERPHGRSASSWWRRSSQSVVATVMEDQKRHGDVHHIFS*

Sequence

>CNT30181605
CGCCCCTGGGCTGGAGCGCCCTCATGGGCGATCGGCATCCTCCTGGTGGCGCCGCTCCTCACAAAGTGTTGTTGCTACTGTGATGGAAGATCAGAAAAGG
CATGGAGATGTGCACCACATCTTTAGTTGATTTTGCACCATGTTTTGGTGCTTGTGTATCTGCTTGTAAGCGCACTTGTATGTGCTTGTGTATCTGTTTT
TGCTTGCTTTAGTTGATGTTGGATGTGAAGTCTTGTATGTGTTGTCGTGTGTATTTGGATGA