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Detailed information on CNT30180387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202335Secale cerealePisum sativum5.8124.6884.6278reverse complement
CNT30289787Secale cerealeTriticum aestivum30.0815.5284.41404forward
CNT30387344Secale cerealeTriticum turgidum27.733.184.14372reverse complement

Expression of CNT30180387

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MIRGSSPARMHLEIKQHQHGGYYLHRAVLPGVQSTQDFWVHTFCLLE*

>peptide 2 (55 aa)
MEGAQSASRLPRLVCHEYGGRGGRGERRNRCLAKLGRLHACRAAVWLTAAALAMA*

>peptide 3 (31 aa)
GGGGVRRTACGSQLPKGEASSKTCITKEERE*

>peptide 4 (30 aa)
MEGVLVLPFLQKDWKEFCKPLICKGMEPKT*

>peptide 5 (34 aa)
GRGRGQENGMRKPTPEGRGFFQNLHNQRRAGMSC*

Sequence

>CNT30180387
AGGGAGGGGGCGGGGTCAGGAGAACGGCATGCGGAAGCCAACTCCCGAAGGGAGAGGCTTCTTCCAAAACCTGCATAACCAAAGAAGAGCGGGAATGAGC
TGTTGACATGGAAGGAGCCCAGAGCGCCTCCCGACTACCTCGACTTGTGTGCCATGAATATGGCGGTCGCGGCGGCCGGGGAGAACGGCGCAACCGCTGC
CTAGCAAAGCTTGGTCGGCTGCATGCGTGCCGTGCGGCCGTCTGGCTTACGGCCGCAGCTCTGGCCATGGCCTGAGCCGTCGTCGCGCTGGTAGGTGTGT
GTGCTACGGCGTAGCTGGTTGGACAAGCGATGGTCGGGAAGGTCGGAAAGGCACCCATATAAGGCTTTGTTTGTGGGCGCACGGGGGCATGTCATGATAA
GAGGCTCATCACCGGCTAGGATGCATTTGGAGATAAAACAACATCAGCATGGAGGCTATTACTTGCATAGGGCTGTGCTACCCGGCGTTCAAAGCACCCA
GGATTTTTGGGTGCACACTTTTTGTTTGTTAGAATAAAATCATCTCTTGATTACCAAATATGACATATGGACTTTACATCTGCACCCAGAATCTTTGCAT
ACATATGGACTTTACATGCTGAAGCCGCCAGACTCTACCTGAATTGAAATTTCGACATTAAACCAAGTTTCTAAACTGAGACTCCGTTTCTTACCGTTGT
CTTTACCATGAGGGTGAGCTCAAAGTTAGCCTCTGCATGGACGTGTTTCTAGCAGATTTTTATTTTTGTGCGCTTTATTAGCTGTCTATTGCCTTTCAGT
TCGCGCGGTCCAATGCCTTCTTTTTAGTTATCTTACTTATGTGTATCTTACTTAGGGTCTGTTTAGGAGCTAAGTACTCTATCTGTAAAGAAATATAAAA
GCGTTTAGATCATCAGAGTAGTGATCTAACCGCTCTTATATTTTCTTTTATGGAGGGAGTATTAGTTTTACCCTTTTTGCAAAAAGATTGGAAAGAATTC
TGCAAGCCTCTAATATGCAAAGGTATGGAACCTAAAACTTAGATTTCAATCATTTCCTGGTGTACTGCGTCCATTAATTGTTATTTTCTTCGAACATCAT
CAGAGGTCCAAGAACAATTTCCGGTTACCTTATGCCTCTCCACTGCTCTCTCTTGTCTTTCATTCATACTCCCTCCATTCAAGAATAAATGTTGTGGTCA
GTTCAACTTTCCGGTACTTTCTCTTTGTGGTATTCCACCTCTTGCTTGCTTCTAGTCCAAAGGTGAAATCCTTAGTAATAATTGGTTGTATTCGACACTT
ATTTTAAAACTAAGAGAGTTAAAGTGCTCTTTTGATCCCTGAG