Detailed information on CNT30202335


BLAST search results

BLAST vs Swiss-Prot:
sp|P15958|NU5C_VICFA, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180387Pisum sativumSecale cereale24.685.8184.6278reverse complement
CNT30605383Pisum sativumGossypium raimondii26.912.5789.4185forward
CNT30152376Pisum sativumPrunus persica78.817.0789.56249forward
CNT30117292Pisum sativumOryza nivara61.0814.1183.94193forward

Expression of CNT30202335

Peptides detected in this lncRNA

>peptide 1 (39 aa)
SFHYYSLLIKLINEFSFLIFFFLLCPIKILNRMNYFSFH*

Sequence

>CNT30202335
TCCTTTCATTATTATTCATTGTTAATAAAGCTAATAAATGAATTTTCTTTTTTAATATTTTTTTTTCTTCTTTGCCCCATAAAGATATTGAATAGAATGA
ACTATTTTTCTTTCCATTGAAATTTTGAAAATGAACGTTTAAATATCCTTCAAAAACAAGTAAATAAATTCGAAACATATAAAATGCTGTTAATCCTGCG
GTGGAACAAGCTATTATTGCGAAAATTGGTGAATACAACCAACTATCATTAAGAATCTCATCCTTGGACCAAAAACAAGCAAAAGGTGGGATACCACAAA
GAGAAAGTGTACCTAT