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Detailed information on CNT3016434


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671301Zea maysSetaria viridis18.1827.3590.6296forward
CNT30664801Zea maysTriticum dicoccoides12.521.0987.8866forward
CNT30348038Zea maysEragrostis tef38.6437.9986.27204forward

Expression of CNT3016434

Peptides detected in this lncRNA

>peptide 1 (70 aa)
LRMRLRLRGTLRWMPRTLALMAVQRHSAASRSTNPSSSGQHCWCWGRPTLTRPSTLAHTLSLSASIGQRP*

Sequence

>CNT3016434
GTTGAGGATGAGGTTGAGGCTAAGGGGCACGTTGAGGTGGATGCCGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCATAGTGCGGCGTCGAGGTCCACC
AACCCCTCCAGCAGCGGGCAACATTGCTGGTGTTGGGGCAGGCCGACCTTGACGAGGCCGAGCACGTTGGCGCACACCTTGAGCTTGAGCGCGTCGATCG
GGCAGCGCCCGTGACTGTGCGACGATGGCGTCGGCACGACTGGCCGACCTTGACGAGGCCTAGCACGTTGGCGCACACCTTGAGCTTGAGCGCGTCGATC
GGGCAGCGCCCGTGGCTGTGCGACGACGGAGTCGGCACGACTGGCGGCGTTGGGACGACTGGGCCAGAACAGTTGGGTTCGCAGCCATGCGCGGTGGCAG
CAAACAGGAGGCTCAGGGCAAGGAAGAGCGCAACCTTGGGAGCCATTGGTGGTGATGGACTGTTACTACTACGGTTTGAGCAGCTAGCACAGTGAGTGCA
GGAAGTGGTGCTTCAGTGCTGCGCTGCG