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Detailed information on CNT30348038


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 8e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30664801Eragrostis tefTriticum dicoccoides12.2921.0989.3966forward
CNT3016434Eragrostis tefZea mays37.9938.6486.27204forward

Expression of CNT30348038

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TSFDNTTHHYVLQWMDKVANGSTTPCLNKITKMRLKKIVTCN*

>peptide 2 (41 aa)
MRLRVTGKLRLMPSTLALMAVQRQTAASRSTSPPSSEQHGS*

Sequence

>CNT30348038
ACACTTCTTTTGATAACACAACACATCATTACGTGTTACAATGGATGGACAAAGTTGCAAATGGCAGTACAACTCCATGCCTGAACAAAATTACAAAGAT
GCGGTTAAAAAAAATTGTAACGTGTAACTAATTCGAATCGTGCAACAGCGGAGCTAGACAGGCCAGCGGCCGCTGCAAGCAGAATGAAATTGACCATGGG
AAGAACACGCGACAGAGAGCACAAGCATGCACAGCTCCTCCTCAGCTTAATTAGTTGGGGCATGTGAAGTCTTTGACGCCGTACTTGCCACAGTTGTTGA
GGATGAGGCTGAGGGTGACGGGCAAGTTGAGGTTGATGCCGAGCACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCCACGAGCCC
GCCCAGCAGCGAGCAGCATGGCTCGTAGCGCGGCAGGCCCACCTTGACGAGGCCCAGCACGTTGGCGCACACGTTCAGCTTCAGCGCGTCGATTGGGCAC
TTGCCGTGTCCGCGGGTCGGAGGCGTCGGCACCACCG